Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47940 110 / 6e-29 EMB3117, DEGP2 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) AT3G16540 76 / 1e-16 DEGP11 DegP protease 11 (.1) AT5G40200 62 / 4e-12 DEGP9 DegP protease 9 (.1) AT5G36950 52 / 2e-08 DEGP10 DegP protease 10 (.1) AT5G40560 48 / 4e-07 DEGP13 DegP protease 13 (.1) AT1G65630 42 / 4e-05 DEGP3 DegP protease 3 (.1) AT1G65640 41 / 8e-05 DEGP4 DegP protease 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005931 [exp] 239 / 3e-78 AT2G47940 452 / 8e-155 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Lus10032163 [exp] 62 / 7e-12 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10014524 [exp] 62 / 7e-12 AT5G40200 843 / 0.0 DegP protease 9 (.1) Lus10024525 [exp] 57 / 3e-10 AT5G36950 764 / 0.0 DegP protease 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135200 [exp] 118 / 1e-31 AT2G47940 932 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.002G207200 [exp] 115 / 1e-30 AT2G47940 931 / 0.0 EMBRYO DEFECTIVE 3117, DEGP protease 2 (.1.2) Potri.012G077900 [exp] 60 / 3e-11 AT5G40200 845 / 0.0 DegP protease 9 (.1) Potri.015G073100 [exp] 60 / 3e-11 AT5G40200 842 / 0.0 DegP protease 9 (.1) Potri.008G079900 [exp] 57 / 3e-10 AT5G36950 857 / 0.0 DegP protease 10 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040905 pacid=23179591 polypeptide=Lus10040905 locus=Lus10040905.g ID=Lus10040905.BGIv1.0 annot-version=v1.0 ATGGGCGATGTGATTGTGAGCTTTGATAATATTCGCGTAGGGTGCGAAGGAACTGTGCCATTCCGGTCGATCGAGCGAATTGCATTTCGTTACCTTATTA GTCAAAAATTTGCAGGCAATGTAGCTGAGCTTGGTGTTATTAGAGGTGGCGAACTCATGAAAGTCAAAGTGGCTCTAAATCCAAGAGTTCATTTGGTGTT AGCGAATGAAGTCAACATCAGATACGAGGATATGGGCAATCAACAGGTTTTAAAATTCAACGGCACTCGGATAAAAAACATACATCATTCATCCCACCTC ATTGACTCTTGCACAGGAAAATACTTGGTGTTTGAATTTGAAGACAATTACTTGGTTGTGTTGGAGAAAGAAGCAGCTCTTGGTGCTTCATCACAGGTTC TCCTAGATTATTGA
AA sequence Show only first row Show all	>Lus10040905 pacid=23179591 polypeptide=Lus10040905 locus=Lus10040905.g ID=Lus10040905.BGIv1.0 annot-version=v1.0 MGDVIVSFDNIRVGCEGTVPFRSIERIAFRYLISQKFAGNVAELGVIRGGELMKVKVALNPRVHLVLANEVNIRYEDMGNQQVLKFNGTRIKNIHHSSHL IDSCTGKYLVFEFEDNYLVVLEKEAALGASSQVLLDY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47940		EMB3117, DEGP2	EMBRYO DEFECTIVE 3117, DEGP pr...		Lus10040905 [exp]	0	1
AT4G17260			Lactate/malate dehydrogenase f...		Lus10028931 [exp]	6.3	1.0000
AT4G22756		ATSMO1-2, ATSMO...	sterol C4-methyl oxidase 1-2 (...		Lus10028908 [exp]	10.9	1.0000
AT5G04350			Plant self-incompatibility pro...		Lus10029383 [exp]	12.5	1.0000
AT5G12180		CPK17	calcium-dependent protein kina...		Lus10000889 [exp]	15.3	1.0000
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10000843 [exp]	15.4	1.0000
					Lus10002413 [exp]	20.4	1.0000
					Lus10022529 [exp]	20.8	1.0000
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10001774 [exp]	20.8	1.0000
					Lus10001326 [exp]	21.5	1.0000
AT3G49055			unknown protein		Lus10011651 [exp]	21.9	1.0000

Compare expression of checked genes

Lus10040905 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.