Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62000 320 / 9e-97 ARF ORE14, HSS, ARF1-BP, ARF2 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) AT1G59750 308 / 4e-94 ARF ARF1 auxin response factor 1 (.1.2.3.4) AT2G46530 273 / 8e-82 ARF ARF11 auxin response factor 11 (.1.2.3) AT3G61830 263 / 5e-78 ARF ARF18 auxin response factor 18 (.1) AT4G23980 260 / 1e-76 ARF ARF9 auxin response factor 9 (.1.2) AT1G34410 258 / 4e-76 ARF ARF21 auxin response factor 21 (.1) AT1G35540 255 / 6e-75 ARF ARF14 auxin response factor 14 (.1) AT1G19220 262 / 3e-74 ARF IAA22, ARF11, ARF19 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) AT1G30330 260 / 3e-74 ARF ARF6 auxin response factor 6 (.1.2) AT5G20730 260 / 2e-73 ARF MSG1, IAA21, BIP, ARF7, IAA25, IAA23, TIR5, NPH4 MASSUGU 1, indole-3-acetic acid inducible 25, indole-3-acetic acid inducible 23, indole-3-acetic acid inducible 21, BIPOSTO, AUXIN RESPONSE FACTOR 7, Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005930 [exp] 1250 / 0 AT5G62000 361 / 2e-112 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10043200 [exp] 319 / 3e-96 AT5G62000 1091 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10032541 [exp] 317 / 2e-95 AT5G62000 1095 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Lus10007440 [exp] 310 / 2e-94 AT1G59750 917 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10024455 [exp] 305 / 1e-92 AT1G59750 905 / 0.0 auxin response factor 1 (.1.2.3.4) Lus10023058 [exp] 292 / 5e-88 AT4G23980 743 / 0.0 auxin response factor 9 (.1.2) Lus10033598 [exp] 268 / 3e-78 AT5G37020 799 / 0.0 auxin response factor 8 (.1.2) Lus10033597 [exp] 270 / 5e-78 AT1G19220 842 / 0.0 indole-3-acetic acid inducible 22, AUXIN RESPONSE FACTOR11, auxin response factor 19 (.1) Lus10017641 [exp] 263 / 9e-75 AT1G30330 810 / 0.0 auxin response factor 6 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135300 [exp] 375 / 8e-119 AT5G62000 466 / 6e-153 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.002G207050 [exp] 369 / 3e-116 AT5G62000 454 / 4e-148 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.012G106100 [exp] 326 / 4e-99 AT5G62000 1035 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.015G105300 [exp] 325 / 2e-98 AT5G62000 1065 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.003G163600 [exp] 313 / 5e-95 AT5G62000 691 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.004G228800 [exp] 308 / 5e-94 AT1G59750 906 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.003G001000 [exp] 307 / 1e-93 AT1G59750 898 / 0.0 auxin response factor 1 (.1.2.3.4) Potri.001G066200 [exp] 304 / 2e-91 AT5G62000 765 / 0.0 ORESARA 14, HLS1 SUPPRESSOR, ARF1-BINDING PROTEIN, auxin response factor 2 (.1.2.3.4) Potri.014G100100 [exp] 292 / 5e-88 AT4G23980 694 / 0.0 auxin response factor 9 (.1.2) Potri.003G142100 [exp] 284 / 8e-85 AT4G23980 706 / 0.0 auxin response factor 9 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [flax] [poplar] Ubiquitin PF02309 [flax] [poplar] AUX_IAA AUX/IAA family CL0072 [flax] [poplar] PF06507 [flax] [poplar] Auxin_resp Auxin response factor CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10040906 pacid=23179938 polypeptide=Lus10040906 locus=Lus10040906.g ID=Lus10040906.BGIv1.0 annot-version=v1.0 ATGCTAGGTCGGACAAAACGTATGATCATGAGATCAATTGATCAAGTGCAAGCCCCACTTATTAATTCCATTTACGCCGCCGGTGGCCATCATCGTCATG CCTCTGCTGCTGTCGCCGCCGCTCATTTGACGAGAAAACGCTGTATTCAGCGTCGGTCTCCTCCTACACGAGTCAACAACGTCCCACCACAAACTAGTAG TCAATCTGGGGATCAGGATGGACTGTTGGACGAATTATGGCAAGCGTGTGCTGGTCCGCTGGCATATGTGCCAAAAGTCGGAGACTATGTGTATTATTTC CTTCAGGGACACATTCAACAGGTCAAGTCATGTATCGAGCAAGACTGTGAAATGGACTTGCCTCGGGGGAATTCTGTTCCGTCTAAGCTCCTCTGCAGAG TTGTCGATGTCCAACGAAAAGCCGAAGCAGTCACGGACGAAGTGTTTGCGCGCATCGTTCTGCTTCCCGTGCTCGAGCCGCCGGATGAGGAGGTGATAAG CGGCAGCTGGAAGGAAGAGGAGGACGATGATGACGAGGACGGGAGTAGTAACAGTAATCAATCATGGAATAAGCTGATCAGATCAAAGAACAGCAAAAGA TCCTTCTCGAAGAAGCTGACTCCATCGGACACAAGCAAACATGGGGGATTCTCTGTCCCCAGGCGCCAGGCTGAAGAATGCCTCCCCCCTCTGAACATGT CAGAAGAACCCCCTGTTCAGGAAATTGCAGCCAAGGACATCCACGACAACCTCTGGCGATTCCGACACATCTACAGAGGAGACCCAAAGCGCCACTTACT TACTAGCGGATGGAGTACCTTCGCCACCTCCAAGCGGATTTCTCCCGGCGATCAGTTCATCTTTGTCAGGGGTGAGAATGGAGAGCTGAGAGTTGGCGTA CGAAGGGGAGGGCGGCAGCTGCAGCAGCATCAGAAGAAGCCGCCGCCATCCGCCACCGTTATATCGGCCAACTGCATACTCCACGGCATCCTCGCTGATG CTTCTCATGCTGTTACTACTGGATCCACTTTCGTCGTCTATTATCGCCCATGGAGCAACTCGAGTGAGTTCCTAGTCCCGGCGGGACGATACCTCAAGTC TGCAAAAATAGAGTATTCGCCCGGGATGAGATTCAAAATGTTGTTTGAAGGTGACGAATGTACTGAGCAGAGAGTTGAAAGATTCGAAGGAACAATTGTT GGCAATGACCCTGTGGATCCCTTGCATTGGCATGACTCTGAATGGGAAAGACTAAAAGTGAAGTGGGATACCACGTCAGACACATTAGAGAGGCCAGAGC GAGTGTCATCGTGGAATATTGATCCCATCGAGCCAGTGCAAATGAAGCTCCCCACTCCTTTTGGCCGTCATCTCAAGAGAAACCGTGATTTTCTTTTTAA CCCGACGGCCTCTGGGTTTAACGCCACAAATCCCTTTAAGGAGAATTTCATTACTGCTGCAGGAATGTTGCGTAATCCATTTTTTCCGCAGAGTCTGAAC TTGGAGGCCTTTCAAGAGCAAAACAAAAAAAGAAAAACTCAACAGGAGCTACCTGACCCTAAATCCCCAATAACAATACCACATTGGTTGAAGCTTTACT CAACCGCCTCAACAAATCCAAACCTACCTCCCAACTTTCCCCTTATACCCAACCAACAGAGGCAGGGTCAAGGCGAGGCAGCTTGGACCGAGATGGACCA TGATGGTTTGAGTCCTACAGCTCCACCGGCCAAGACCAATTTTTCGGTTGGACCGCCTGGAGACAAGTACTACTCATCCTCCTCCTCTTCTTCTTCTTCA CAGGGAAGAAAGGAGGACGATGGAAATGAAGCTCTGCTTGCTTCTCCGCCTCACCAACACGAGGCGGATAAACGCAAGTGTATGGTTTTTGGAGTGAATA TTCTCTCCAATATTATCGAAACGGAGTTCCCTTCACCACAAATTGTTACTGTTACTACTGACGATCTCAGCGAGAGCACCCCTGCCGCTGCAGATCAATG TCTCTCCAACTCTGACATTATCGTTCTCCCGTTAACCTCCCAGCATTCGAGCGGAGGAGGTTCGGAGACGATATCTTATACCCCTGCTGCCGCCGCCACC ACTATCCCTCCCAACAGTACTACTTGCAGCATCATCATCAAGGTGTTGAAACACGGAAGTCAACTCGGAAGGCTGGTTGATCTAGCTCAGTTCAACGGGC ATGACCAGCTGGTTCGCGAACTTGACCGAATGTTCGGCTTCCGCGGTAGCTTGGTTGACGGGGGCAGTGGATGGCATGTTACTTTTGTTGATGCAGCGGA TAGCCAGCATCATCATGACAGTACAAGTGAAATCATGTTCCCCATCGCTGACCGTCAGTGGCAGTTGAGTATATGA
AA sequence Show only first row Show all	>Lus10040906 pacid=23179938 polypeptide=Lus10040906 locus=Lus10040906.g ID=Lus10040906.BGIv1.0 annot-version=v1.0 MLGRTKRMIMRSIDQVQAPLINSIYAAGGHHRHASAAVAAAHLTRKRCIQRRSPPTRVNNVPPQTSSQSGDQDGLLDELWQACAGPLAYVPKVGDYVYYF LQGHIQQVKSCIEQDCEMDLPRGNSVPSKLLCRVVDVQRKAEAVTDEVFARIVLLPVLEPPDEEVISGSWKEEEDDDDEDGSSNSNQSWNKLIRSKNSKR SFSKKLTPSDTSKHGGFSVPRRQAEECLPPLNMSEEPPVQEIAAKDIHDNLWRFRHIYRGDPKRHLLTSGWSTFATSKRISPGDQFIFVRGENGELRVGV RRGGRQLQQHQKKPPPSATVISANCILHGILADASHAVTTGSTFVVYYRPWSNSSEFLVPAGRYLKSAKIEYSPGMRFKMLFEGDECTEQRVERFEGTIV GNDPVDPLHWHDSEWERLKVKWDTTSDTLERPERVSSWNIDPIEPVQMKLPTPFGRHLKRNRDFLFNPTASGFNATNPFKENFITAAGMLRNPFFPQSLN LEAFQEQNKKRKTQQELPDPKSPITIPHWLKLYSTASTNPNLPPNFPLIPNQQRQGQGEAAWTEMDHDGLSPTAPPAKTNFSVGPPGDKYYSSSSSSSSS QGRKEDDGNEALLASPPHQHEADKRKCMVFGVNILSNIIETEFPSPQIVTVTTDDLSESTPAAADQCLSNSDIIVLPLTSQHSSGGGSETISYTPAAAAT TIPPNSTTCSIIIKVLKHGSQLGRLVDLAQFNGHDQLVRELDRMFGFRGSLVDGGSGWHVTFVDAADSQHHHDSTSEIMFPIADRQWQLSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Lus10040906 [exp]	0	1
AT1G66120			AMP-dependent synthetase and l...		Lus10031366 [exp]	4.4	0.8817
AT3G29970			B12D protein (.1)		Lus10035132 [exp]	8.3	0.8688
AT3G61360			Tetratricopeptide repeat (TPR)...		Lus10020243 [exp]	9.7	0.7880
AT5G19890			Peroxidase superfamily protein...		Lus10026748 [exp]	10.3	0.8719
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Lus10002667 [exp]	11.5	0.8028
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10040037 [exp]	11.6	0.8554
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10017436 [exp]	13.9	0.8662
					Lus10015230 [exp]	15.0	0.8512
AT3G11480		BSMT1, ATBSMT1	S-adenosyl-L-methionine-depend...		Lus10032299 [exp]	16.1	0.8347
					Lus10010306 [exp]	17.2	0.8399

Compare expression of checked genes

Lus10040906 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.