Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06350 172 / 3e-47 EMB3004, MEE32 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005928 [exp] 347 / 2e-117 AT3G06350 180 / 9e-52 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10001725 [exp] 336 / 1e-109 AT3G06350 315 / 9e-100 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10004130 [exp] 334 / 4e-109 AT3G06350 398 / 3e-132 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10033981 [exp] 286 / 3e-91 AT3G06350 752 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Lus10012797 [exp] 278 / 1e-87 AT3G06350 748 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135500 [exp] 426 / 8e-146 AT3G06350 444 / 8e-151 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029900 [exp] 333 / 2e-109 AT3G06350 516 / 4e-179 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.005G043400 [exp] 332 / 5e-109 AT3G06350 508 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.010G019000 [exp] 281 / 7e-89 AT3G06350 736 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.013G029800 [exp] 259 / 8e-81 AT3G06350 630 / 0.0 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.008G196100 [exp] 148 / 2e-41 AT3G06350 326 / 1e-108 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1) Potri.017G103401 [exp] 48 / 2e-07 AT3G06350 59 / 2e-12 MATERNAL EFFECT EMBRYO ARREST 32, EMBRYO DEFECTIVE 3004, dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF08501 [flax] [poplar] Shikimate_dh_N Shikimate dehydrogenase substrate binding domain CL0036 [flax] [poplar] TIM_barrel PF01487 [flax] [poplar] DHquinase_I Type I 3-dehydroquinase CL0063 [flax] [poplar] NADP_Rossmann PF01488 [flax] [poplar] Shikimate_DH Shikimate / quinate 5-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10040908 pacid=23179553 polypeptide=Lus10040908 locus=Lus10040908.g ID=Lus10040908.BGIv1.0 annot-version=v1.0 ATGGCATTCTGGACTAATCTTCTGGTGTGCACGCCTCTGGAACGTGAAACCACAGGAGGAATGTTGTGCGCCATGGAGAAAGCCAAGGCAGAAGGCGCAG ACGTTGTGGAGCTTTCCATGGGTTCCTTGTCATTCTCCCACATTTCTCAAGTTGAGACGCTCCTTGCACAAAGAACCCTGCCTACTATCGTCTCTTACAG CAGGCTGAAAAAATCGTCAAGCGCCGAGGAAAGGAGGCAAAGTCTCAGCACTTGTTTGGAAGTGTTGAGACTGGCTCTAGAATTAGATGTGGAGTTTCTA GAAATTGATTACGAGATGGCTTCTGATGCCAGGATGGTAGAGGAGGTATTAGAGAGCCGCAGGTCCAGCATCAAGCTTATTGTGTCAAGCCATGTAAATG ACACAAAAGTCTTTGGCCTAATTTCAAACCCCGTTGGGCATAGCAAGGGTCCTATTCTCCACAACCCTGCTTTTCGCCACACGGGATATAACGGGATTTA CGTTCCTATGCAAGTGGATGATATCAAAGAGTTCTTCACAATTTACACCAGCACTGATTTTGCAGGTTTCAGTGTTGGAATCCCACACAAGGAAGCTGCA GTAGGATGCTGTGACGAGGTCGATCCACTGGCTAAGTTAATAGGAGCTGTAAATACAATAGTAAGAAGGGCCAAAGACGGGAAGCTGGTTGGCTACAACA CAGACTGCGAGGCGTCAATCTCAGCGATAGAGGATGCACTCAGAGTCAGAGGTGAAAAGCCACCCTTCCCTAAAACACATCTCGTTCCATCGTCAACTAT GAATATTGATATACATGGTGCAAAAAACGCAGAAAAAGGAAGGGTTTTTCGAAACAGAGGTTACTTGGAGGATAATAGCAGTAGCAGTTTTGGTGGTCCT CTAGCTGGGAAGACTTTTGTGGTAGTGGGTGCAGGGGGAGCTGGGAGAGCACTCGCATTCGGTGCCAAAAGCAGAGGTTGTAAAAGGGTTGTCATCTTCA ACCGCAATTTTGAGAGAGCCAAGGCTCTGGCTGCTGCAGTTTCAGGAGAAGCACTCCCTTACGAGACCCTGGACACATTCCAGCCAGAGAAAGGCATGAT TCTTGCAAATGCTTCTGCCGTTGGAATGCAGCCAAACACAGACACCACACCTGTTTCCAAGGAGGCATTAAAGGTGTACGATCTGGTTTTCGATGCGGTT TATACCCCGAGAAACACGAGACTGTTGCAGGAGGCTGGAGAAGTAGGGGCCACCGTGGTAAGTGGAGTTGAGATGTTCATCAGACAGGCTCTTGGCCAGT TCACCCTCTTCACTGGCGGCTTAGCTCCGGAGGCATTCATTCGTAAGCTTGTTCTGGAGCAATTCTGA
AA sequence Show only first row Show all	>Lus10040908 pacid=23179553 polypeptide=Lus10040908 locus=Lus10040908.g ID=Lus10040908.BGIv1.0 annot-version=v1.0 MAFWTNLLVCTPLERETTGGMLCAMEKAKAEGADVVELSMGSLSFSHISQVETLLAQRTLPTIVSYSRLKKSSSAEERRQSLSTCLEVLRLALELDVEFL EIDYEMASDARMVEEVLESRRSSIKLIVSSHVNDTKVFGLISNPVGHSKGPILHNPAFRHTGYNGIYVPMQVDDIKEFFTIYTSTDFAGFSVGIPHKEAA VGCCDEVDPLAKLIGAVNTIVRRAKDGKLVGYNTDCEASISAIEDALRVRGEKPPFPKTHLVPSSTMNIDIHGAKNAEKGRVFRNRGYLEDNSSSSFGGP LAGKTFVVVGAGGAGRALAFGAKSRGCKRVVIFNRNFERAKALAAAVSGEALPYETLDTFQPEKGMILANASAVGMQPNTDTTPVSKEALKVYDLVFDAV YTPRNTRLLQEAGEVGATVVSGVEMFIRQALGQFTLFTGGLAPEAFIRKLVLEQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10040908 [exp]	0	1
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10006036 [exp]	1.0	0.9320
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10028475 [exp]	2.4	0.8959
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	2.4	0.9180
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10024487 [exp]	3.9	0.9065
AT1G78060			Glycosyl hydrolase family prot...		Lus10022374 [exp]	4.0	0.9004
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Lus10037348 [exp]	5.1	0.8719
AT5G03250			Phototropic-responsive NPH3 fa...		Lus10023523 [exp]	6.0	0.8648
AT3G59420		ACR4	crinkly4 (.1)		Lus10000764 [exp]	6.9	0.8683
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024818 [exp]	7.7	0.8978
AT1G67290		GLOX1	glyoxal oxidase 1, glyoxal oxi...		Lus10034959 [exp]	9.4	0.8505

Compare expression of checked genes

Lus10040908 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.