Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G03110 313 / 6e-104 AtRBP-DR1 RNA-binding protein-defense related 1 (.1.2) AT1G03457 301 / 1e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G16280 76 / 1e-14 FCA RNA binding;abscisic acid binding (.1.2.3.4) AT4G13850 62 / 2e-11 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT1G22760 64 / 1e-10 PAB3 poly(A) binding protein 3 (.1) AT5G51300 60 / 2e-09 splicing factor-related (.1.2.3) AT3G23830 55 / 3e-09 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT1G71770 58 / 6e-09 PAB5 poly(A)-binding protein 5 (.1), poly(A)-binding protein 5 (.2) AT4G39260 54 / 9e-09 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT3G26420 56 / 1e-08 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005926 [exp] 523 / 0 AT4G03110 548 / 0.0 RNA-binding protein-defense related 1 (.1.2) Lus10029574 [exp] 76 / 1e-14 AT4G16280 467 / 1e-155 RNA binding;abscisic acid binding (.1.2.3.4) Lus10006304 [exp] 74 / 2e-14 AT4G16280 322 / 7e-106 RNA binding;abscisic acid binding (.1.2.3.4) Lus10037787 [exp] 69 / 3e-12 AT4G16280 391 / 5e-127 RNA binding;abscisic acid binding (.1.2.3.4) Lus10017070 [exp] 68 / 5e-12 AT4G16280 376 / 2e-121 RNA binding;abscisic acid binding (.1.2.3.4) Lus10020953 [exp] 61 / 2e-10 AT3G26420 170 / 1e-52 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10038932 [exp] 62 / 5e-10 AT5G51300 897 / 0.0 splicing factor-related (.1.2.3) Lus10023758 [exp] 56 / 2e-09 AT2G37510 164 / 9e-53 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10003980 [exp] 55 / 5e-09 AT2G37510 169 / 1e-54 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G135540 [exp] 422 / 1e-146 AT4G03110 513 / 0.0 RNA-binding protein-defense related 1 (.1.2) Potri.002G214000 [exp] 369 / 3e-126 AT4G03110 506 / 4e-179 RNA-binding protein-defense related 1 (.1.2) Potri.010G147900 [exp] 80 / 6e-16 AT4G16280 338 / 3e-107 RNA binding;abscisic acid binding (.1.2.3.4) Potri.017G059000 [exp] 67 / 1e-13 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319900 [exp] 65 / 2e-12 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.016G068300 [exp] 62 / 2e-10 AT3G52380 264 / 5e-87 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1) Potri.002G192900 [exp] 61 / 5e-10 AT2G47310 273 / 1e-85 flowering time control protein-related / FCA gamma-related (.1) Potri.001G319800 [exp] 57 / 6e-10 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G126400 [exp] 60 / 1e-09 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.006G202000 [exp] 58 / 3e-09 AT3G52380 270 / 2e-89 PIGMENT DEFECTIVE 322, chloroplast RNA-binding protein 33 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10040910 pacid=23179832 polypeptide=Lus10040910 locus=Lus10040910.g ID=Lus10040910.BGIv1.0 annot-version=v1.0 ATGGCGGAGGATAAAAAGGAAGGCAGAGCAGGAGGGAGCGAGGAGAGTGTGAAGTTATTTGTAGGGCAAGTCCCCAAGCACATGACGGAAGCTCAGCTTC TGGCAATGTTCAAGGAGTTTGCCTTGGTAGACGAGGTCAACATCATCAAAGACAAGACTACGCGCGCTTCCCGAGGGTGTTGTTTCGTCATTTGTCCGTC CAGGGAAGAAGCTGACAAGGCGGTCAATGAGTGTCATAACAAGAAAACCTTGCCTGGGTATGATACAAAAGACCAAGCTCTTGCTGCCCTGGAGGCCATC AATGGGAAACATAAAATGGAGGGCTCAAATGTCCCTCTGGTCGTCAAATGGGCAGATACAGAAAAGGAAAGGCAGGCAAGGAGGGCACTGAAAGCACAAT CTCAGGCATCGAATATGCCAAATTCTGAATTACAGCATCCTTCCTCATTTGGAGTCTTGCCAATGGGATATGCCCCTCCTTACAATGGCTATGGTTACCA GGCTCCTGGAACATATGGAATCATGCCTTACCGAATACCATCGATGCAGAATCAACCTGCCTTTCATGGCATGATTCCTCCGGCAAATCAAGGAACTGCA TTGCGAGGTGGAATCAGACCCGACATTTCTCGCAACATGGGACCCAGAAATTATGGAGCTCCTCCGGCAAGTTATGTGGGCTCGGCTTACCCTGCAGCCC CAGGTCTTCAGTACTCTATGCCTTATCCCGCAGGAATGATGGGTCATCGACCTTTAAGTGGCTCGCCTAGTTCAATGTCCCAGCAAGTTGGTAGCATGAG TAGTCCCGGATCCTCCTCGGGTGTCACTACAAGTTCGGGGTCACAGGTCGAAGGTCCACCTGGTGCGAATTTGTTCATATACCACATACCACAAGAATTC GGAGATCAGGAGCTTGCAAATGCGTTCCAACCATTTGGCAAGGTGTTGAGTTCAAAGGTGTTTGTCGACAAAGCTACTGGTGTTAGCAAATGTTTTGGTT TCGTTAGCTATGAGTCGCCAGCTGCAGCGCAAGCTGCGATTGGGGTGATGAATGGATGCCAGTTAGGGGGTAAGAAATTGAAGAGTCAATTGCCAGTTAG GGGGTAA
AA sequence Show only first row Show all	>Lus10040910 pacid=23179832 polypeptide=Lus10040910 locus=Lus10040910.g ID=Lus10040910.BGIv1.0 annot-version=v1.0 MAEDKKEGRAGGSEESVKLFVGQVPKHMTEAQLLAMFKEFALVDEVNIIKDKTTRASRGCCFVICPSREEADKAVNECHNKKTLPGYDTKDQALAALEAI NGKHKMEGSNVPLVVKWADTEKERQARRALKAQSQASNMPNSELQHPSSFGVLPMGYAPPYNGYGYQAPGTYGIMPYRIPSMQNQPAFHGMIPPANQGTA LRGGIRPDISRNMGPRNYGAPPASYVGSAYPAAPGLQYSMPYPAGMMGHRPLSGSPSSMSQQVGSMSSPGSSSGVTTSSGSQVEGPPGANLFIYHIPQEF GDQELANAFQPFGKVLSSKVFVDKATGVSKCFGFVSYESPAAAQAAIGVMNGCQLGGKKLKSQLPVRG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10040910 [exp]	0	1
AT4G03110		AtRBP-DR1	RNA-binding protein-defense re...		Lus10005926 [exp]	1.0	0.9022
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10014538 [exp]	1.4	0.8524
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10028686 [exp]	11.7	0.7624
AT1G53700		PK3AT, WAG1	PROTEIN KINASE 3 ARABIDOPSIS T...		Lus10005583 [exp]	12.1	0.7896
AT2G26980		CIPK3, SnRK3.17	SNF1-RELATED PROTEIN KINASE 3....		Lus10021488 [exp]	12.2	0.6885
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	13.6	0.8053
AT1G28100			unknown protein		Lus10001800 [exp]	13.6	0.7552
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	14.6	0.8104
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	14.7	0.8057
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	16.1	0.8282

Compare expression of checked genes

Lus10040910 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.