Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16820 345 / 1e-114 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G02990 342 / 1e-113 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT1G32330 294 / 9e-95 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 262 / 4e-82 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT2G26150 219 / 2e-67 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G22830 204 / 3e-61 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT1G67970 200 / 1e-59 HSF AT-HSFA8 heat shock transcription factor A8 (.1) AT3G51910 185 / 2e-55 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT5G03720 186 / 3e-54 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1) AT4G13980 179 / 4e-51 HSF AT-HSFA5 HEAT SHOCK TRANSCRIPTION FACTOR A5, winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030956 [exp] 322 / 1e-105 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040091 [exp] 317 / 2e-103 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10011065 [exp] 314 / 8e-103 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10000312 [exp] 313 / 2e-102 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10006618 [exp] 224 / 1e-68 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10039376 [exp] 220 / 2e-67 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 214 / 4e-65 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10000492 [exp] 209 / 4e-63 AT3G22830 365 / 1e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10022083 [exp] 205 / 9e-62 AT3G22830 314 / 1e-104 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079800 [exp] 440 / 2e-151 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.001G138900 [exp] 340 / 4e-112 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 338 / 9e-112 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.006G226800 [exp] 227 / 5e-70 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.005G214800 [exp] 221 / 7e-68 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 218 / 9e-67 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.002G048200 [exp] 216 / 3e-66 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.004G062300 [exp] 216 / 1e-65 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.010G082000 [exp] 211 / 4e-64 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.011G071700 [exp] 209 / 7e-63 AT4G18880 400 / 4e-138 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00447 [flax] [poplar] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Lus10040911 pacid=23179671 polypeptide=Lus10040911 locus=Lus10040911.g ID=Lus10040911.BGIv1.0 annot-version=v1.0 ATGGTTGATGTGGCCGCCGGCAGCACCGTGCCGCCGTTTCTGTGCAAAACCTACCAAATGGTGGAAGACCCGTCCACAGATTCCGTCGTCTCCTGGAGCA GCGGCGACAACAGTTTCGTGGTGTGGAACGTCCCCGAGTTTCAGAAACAGCTTTTGCCCAAGTTCTTTAAGCACAGCAACTTCTCCAGCTTCGTCAGGCA ATTGAACACTTACGGATTTAGGAAAGTTGACCCAGATCGGTTTGAGTTTGCAAATGAGGGATTTTTGAGAGGCCAAAGGCACTTACTGAAGAATATATCA AGGAAAAAGCATGTCCAGACGCAAGGGACTCAGTTACCTCAACCTCAGAGCTCCCCAGCTACACCACCTGTCCAAGCTGGTAAATTGGGGGTTGAGGAGG AAGTTGAAAGGCTGAAACGGGACAAGAATGTTCTCATGCAAGAGCTTGTTAGGTTAAGGCAACAGCAGACAAATACTGATAACCAATTGCAGACTGTGGG GAAACGCGTACAAGGTATGGAGCAGAGGCAACAACAAATGATGTCATTCCTTGCTAAGGCCTTGCAGAGTCCTGGAATATTTGGACAATTTGTACAGCAG CAGAATCAAAACAGTAGACGTATCGTGGGTGGGACTAAAAAGAGGAGACTTCCTGCTCATGAAGGTGAACTTCTGGCTGGTGAGATTCAAGATAGTCATG ATAGACAAATCGTCAAGTTCCATTCGTCCATGAATGAAGCTGCAAAAGCAATGTTGCGACAGATCCTGAAGATCAATACAACATCATCTATGCTAGAACA GTCTATGAATAATGTCGGTCCTTTCCTCATCAGTGATGTTCCTGCATCAGGTGCGAAGCTTTCAAGAGTTTCCAGGGCGTCATTTTTGCCTTCTGAACCA GGTTTACCTGCTGATAATGTTCCTAAGACAGTTTCTGAGGTCCAGCCTGCTCCTGCTTCAACTGACTGTACTGAATCAAATCATCTGATCAATATGGACG TGTCTGATTCTAGAGAAGAAATCGGTTTACCAGCTTTCTGTGAGATTGGACCGAAAATTCCTAGGCCAATTCCCAGTGAGAGTAATGTTGGGGCAGGAGC AGCGACTGCGGAGGGTATGACTGTGGAGAAGTCTCCTAATGAAGATGCTGATCACATGGAAGATGGTTTACCTAAGCTTCCAGATATAAGTGATGTATTT TGGGAACAGTTTCTCAGTACAAGCCCGCTCAGTGGAGAAACAAATAATGGTAACCCCGGCACTGTAGAAACCGGTTCAAGCAATGGAGAGGAGGAGAAAA GGTGGGACAAGGTTGAAGGAATGAATTATCTGACCGAGCAGATGGGGCTTCTGATATCTGAAAGTGGAATAGTCTGA
AA sequence Show only first row Show all	>Lus10040911 pacid=23179671 polypeptide=Lus10040911 locus=Lus10040911.g ID=Lus10040911.BGIv1.0 annot-version=v1.0 MVDVAAGSTVPPFLCKTYQMVEDPSTDSVVSWSSGDNSFVVWNVPEFQKQLLPKFFKHSNFSSFVRQLNTYGFRKVDPDRFEFANEGFLRGQRHLLKNIS RKKHVQTQGTQLPQPQSSPATPPVQAGKLGVEEEVERLKRDKNVLMQELVRLRQQQTNTDNQLQTVGKRVQGMEQRQQQMMSFLAKALQSPGIFGQFVQQ QNQNSRRIVGGTKKRRLPAHEGELLAGEIQDSHDRQIVKFHSSMNEAAKAMLRQILKINTTSSMLEQSMNNVGPFLISDVPASGAKLSRVSRASFLPSEP GLPADNVPKTVSEVQPAPASTDCTESNHLINMDVSDSREEIGLPAFCEIGPKIPRPIPSESNVGAGAATAEGMTVEKSPNEDADHMEDGLPKLPDISDVF WEQFLSTSPLSGETNNGNPGTVETGSSNGEEEKRWDKVEGMNYLTEQMGLLISESGIV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Lus10040911 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	15.6	0.7282
AT1G48040			Protein phosphatase 2C family ...		Lus10037832 [exp]	17.5	0.7209
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	41.6	0.6876
AT2G39710			Eukaryotic aspartyl protease f...		Lus10000514 [exp]	82.4	0.6470
AT1G18740			Protein of unknown function (D...		Lus10029782 [exp]	82.8	0.6471
AT4G08170			Inositol 1,3,4-trisphosphate 5...		Lus10032808 [exp]	95.5	0.6383
AT4G12680			unknown protein		Lus10016056 [exp]	106.1	0.5799
					Lus10033246 [exp]	113.1	0.5830
AT1G32120			unknown protein		Lus10023735 [exp]	144.2	0.5690
AT3G08760		ATSIK	Protein kinase superfamily pro...		Lus10022742 [exp]	177.2	0.5836

Compare expression of checked genes

Lus10040911 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.