Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01350 448 / 5e-159 C3HZnF Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1) AT5G06420 446 / 1e-157 C3HZnF Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1), Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.2) AT4G01023 97 / 2e-23 RING/U-box superfamily protein (.1) AT2G23780 45 / 3e-05 RING/U-box superfamily protein (.1) AT3G07200 42 / 0.0002 RING/U-box superfamily protein (.1.2) AT1G74990 41 / 0.0002 RING/U-box superfamily protein (.1) AT2G42030 42 / 0.0004 RING/U-box superfamily protein (.1) AT5G48655 41 / 0.0004 RING/U-box superfamily protein (.1.2.3) AT1G19310 41 / 0.0005 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009810 [exp] 575 / 0 AT1G01350 467 / 1e-166 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1) Lus10022492 [exp] 45 / 4e-05 AT2G23780 241 / 1e-80 RING/U-box superfamily protein (.1) Lus10016796 [exp] 45 / 4e-05 AT2G23780 242 / 3e-81 RING/U-box superfamily protein (.1) Lus10030044 [exp] 42 / 0.0005 AT1G05120 1047 / 0.0 Helicase protein with RING/U-box domain (.1) Lus10010791 [exp] 41 / 0.0008 AT1G19310 266 / 1e-90 RING/U-box superfamily protein (.1) Lus10016303 [exp] 41 / 0.0008 AT1G19310 268 / 2e-91 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G097300 [exp] 452 / 4e-161 AT1G01350 449 / 2e-159 Zinc finger (CCCH-type/C3HC4-type RING finger) family protein (.1) Potri.014G154600 [exp] 45 / 5e-05 AT1G05120 1058 / 0.0 Helicase protein with RING/U-box domain (.1) Potri.005G127900 [exp] 44 / 5e-05 AT2G23780 234 / 3e-78 RING/U-box superfamily protein (.1) Potri.014G040400 [exp] 42 / 0.0002 AT1G19310 226 / 4e-75 RING/U-box superfamily protein (.1) Potri.002G133000 [exp] 42 / 0.0003 AT1G19310 244 / 5e-82 RING/U-box superfamily protein (.1) Potri.006G035700 [exp] 41 / 0.0008 AT5G05130 1117 / 0.0 DNA/RNA helicase protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0537 [flax] [poplar] CCCH_zf PF00642 [flax] [poplar] zf-CCCH Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Representative CDS sequence Show only first row Show all	>Lus10040914 pacid=23179972 polypeptide=Lus10040914 locus=Lus10040914.g ID=Lus10040914.BGIv1.0 annot-version=v1.0 ATGGCGGAATCAGGAGATTCTCAGAAGCCTGAACAAGTATGCAACTTTTTTAGAAAGCCATCTAAGAACAAAAACATAAGGAAGAGAGCTATTGTGGAAG ATGATGCTGAGGATTCAAATACTGAAAGCTCTGTGCTGAACAATCAGAAGAAGGCGCCAAAGGCTGATAATAAGTTGTACTTCTCGACTGGACCCTCCAA GAGCTCAAAGTCATCTGAGTCTGACTCTGGCAATGCGAAGTCCATCTTTCAGTTCGAGTCATCAAAGGAAATCCAAGTACAAAATGACAATAGAGCAACT GCAACTTTAGAAACTGAGACAGACTTCTCAAGAGACGCCCGAGCAATACGTGAAAGAGCTCTGAAGCAAGCAGAGGAGGGTTTGAATAGTAAGAAGCCAA GTTCTAGCAACGAGAAGCTGTATAAAGGGGCTCATGGATATACAGATCACAAAGCTGGATTTAGAAGAGAGCAAACAATTGCAAGTGAGAAAGCCGGTGG ATCACATGGCCCTCTTAGAGCATCTGCACACATCAGGGTCTCAGCAAGGTTTGATTACCAGCCAGATATATGTAAAGATTACAAAGAAACTGGTTATTGT GGTTATGGAGATTCGTGCAAGTTTATGCATGATCGAGGGGATTACAAGTCTGGATGGCAGATGGAGAAGGAATGGGAAGAAGTAGAGAAGGCAAGGAAGA GGAGATTAGCTATGGGTGGTGGTGATGAGGAAGGACAGCTTCTTGAAGCTGAAGCTGATGACGACGATGAAGATGAGGATGCCTTACCATTTGCATGCTT CATTTGTAGAGAGCCTTTTGAAGATCCTGTTATGACAAAATGCAAGCATTACTTCTGTGAACATTGTGCTCTAAAGCATCACTCCAAAAACAAGAAATGC TTTGTGTGCAACAAGCCAACTCTTGGCATTTTCAACACTGCCCATGAAATACGCAAAAGGATTGCAGAGGCGGGTAAATAG
AA sequence Show only first row Show all	>Lus10040914 pacid=23179972 polypeptide=Lus10040914 locus=Lus10040914.g ID=Lus10040914.BGIv1.0 annot-version=v1.0 MAESGDSQKPEQVCNFFRKPSKNKNIRKRAIVEDDAEDSNTESSVLNNQKKAPKADNKLYFSTGPSKSSKSSESDSGNAKSIFQFESSKEIQVQNDNRAT ATLETETDFSRDARAIRERALKQAEEGLNSKKPSSSNEKLYKGAHGYTDHKAGFRREQTIASEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYC GYGDSCKFMHDRGDYKSGWQMEKEWEEVEKARKRRLAMGGGDEEGQLLEAEADDDDEDEDALPFACFICREPFEDPVMTKCKHYFCEHCALKHHSKNKKC FVCNKPTLGIFNTAHEIRKRIAEAGK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10040914 [exp]	0	1
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Lus10009810 [exp]	2.4	0.9101
AT2G26430		ATRCY1, RCY1	arginine-rich cyclin 1 (.1.2.3...		Lus10041418 [exp]	6.6	0.9149
AT3G52220			unknown protein		Lus10039101 [exp]	10.4	0.9076
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Lus10032274 [exp]	16.1	0.9059
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10041016 [exp]	24.7	0.8942
AT3G22845			emp24/gp25L/p24 family/GOLD fa...		Lus10039381 [exp]	25.1	0.8889
AT1G55680			Transducin/WD40 repeat-like su...		Lus10035667 [exp]	25.5	0.9023
AT3G18620			DHHC-type zinc finger family p...		Lus10013426 [exp]	26.2	0.8986
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Lus10012306 [exp]	28.7	0.9005
AT5G26990			Drought-responsive family prot...		Lus10031467 [exp]	29.7	0.8857

Compare expression of checked genes

Lus10040914 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.