Plant FIBer expression Database

Lus10040915 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G61680 338 / 8e-109 alpha/beta-Hydrolases superfamily protein (.1)
AT1G02660 275 / 5e-84 alpha/beta-Hydrolases superfamily protein (.1)
AT3G62590 252 / 5e-76 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009811
[exp]
525 / 0 AT3G61680 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10010031
[exp]
262 / 4e-79 AT1G02660 702 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Lus10036334
[exp]
256 / 7e-77 AT1G02660 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G169600
[exp]
381 / 1e-124 AT3G61680 576 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Potri.014G097200
[exp]
379 / 5e-124 AT3G61680 580 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
Potri.002G197900
[exp]
268 / 2e-81 AT1G02660 561 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0028 AB_hydrolase PF01764 Lipase_3 Lipase (class 3)
Representative CDS sequence
>Lus10040915 pacid=23179599 polypeptide=Lus10040915 locus=Lus10040915.g ID=Lus10040915.BGIv1.0 annot-version=v1.0
ATGGCATGCAGTTCAGTGACCATGCCTGCGTCTCCAACGACGACACAATTCGGCAGCGATCTTCGTCGTCCGGACTCCAGCAAGGATTTAACGAATCAAG
CTAACATGAGGAGGTGCTATTCTGACGGTCACCTCTGCAAATCTATGAACTGCTTAGGTGTATCGGCAGTCCAGCCGAAGCTGAAGACCAGCCGTTCGTT
TGGGTTTCCGTTCCAAATTGCCGGATCGTTCATCCCACGCTCGGTTCGAACGCTTTTGTTTGATCCGGAGACGAGCAGGATGACTAGCATGGAGTATAAG
GAACTGGGAAATGAAGTTGGCAGTTCTAATAAGGGCAGCAAGTTCGGGGAACATGAGGAAGTTAAGAGAACCAATTGGATGGAAAGGCTCTTGGAGATCA
GGAGCCATTGGAGGAATCGACATCCGAAAGATGACATGGACGAGGAATCGTATATGGATGAAGCTGGTGATTGCTATGGCGATGGTGATGAAGATGGATG
TTTGGCTGATTACGACTCGGAGGAAGAAGAGGAGTTTGATTGTGAGATGTTCAACCGACTTTTGAAGCGGGTTCCTTGGTCTGATACTAAGCTCTTCTCC
AGATTGGCTTTCTTGTGCAACATGGCTTATGTTATATCAGACATTAAGGGTTCAGACTCCTTTGCTTCCTGGCAGGCAAATCTCTTCTTTGAACCTGCTA
AGTTTGAGGGAACTGATGTGCTCGTTCATAGAGGAATTTATGAAGCAGCTAAGGGAATCTATGACCAATATATGCCAGAGATAATCAGTCACTTGGAGAC
ATATGGGGATCGCGCAAAGCTTCAGTTTACAGGCCACTCACTAGGCGGTAGCCTATCACTTCTAATCCACTTGATGCTCTTGACCAGGAAGGTTGTCAAG
CCATCCACCCTCCGACCAGTGGTCACTTTCGGCTCGCCTTTTATTTTCTGTGGAGGTCATAAAGTGCTCAACACTTTGGGGTTGGATGAAAACCACATCC
ACAATGTGATGATGCATAGAGATATTGTACCAAGAGCTTTCTCCTGCAACTATCCTGACCATGTTGCAGTACTCCTCAAACGTTTAAATGGAACCTTCAG
GTCCCACCCATGTCTGAATAAGCAGAAGATGTTATACTCACCTCTCGGCAAGATATTTATCCTCCAGCCAGAAGAGGAATCATCACCTTCACACCCATTA
CTGCCTTCAGGCAGTGCCCTATATACTTTTGATGATTCCGAGTCTGGAAAGTCATCAAAGAGTGCTGCCCTCAAGGCATTTCTCAATCGCCCTCACCCAC
TAGAAACACTAAGTAACCCTACAGCCTATGGCTCAGATGGAACAATTCTAAGGGACCATGACTCAGGAAACTATCTCAAGGCACTGCATGGGCTTGTAAG
GCAGAACACAAAGACTGTAGCCTGGAAAGCGATCAAGCAGCAGCAAGAAAAAGTTCTGTGGCCACTACTTAAGGCACCCTCTCCTCACTCATGGAACCAG
CATGATAATAGAAGTAACGATTTCAACAGCGGCTTGTTGCTGAATAAGGAGGTGATGACTAAAGTGTGA
AA sequence
>Lus10040915 pacid=23179599 polypeptide=Lus10040915 locus=Lus10040915.g ID=Lus10040915.BGIv1.0 annot-version=v1.0
MACSSVTMPASPTTTQFGSDLRRPDSSKDLTNQANMRRCYSDGHLCKSMNCLGVSAVQPKLKTSRSFGFPFQIAGSFIPRSVRTLLFDPETSRMTSMEYK
ELGNEVGSSNKGSKFGEHEEVKRTNWMERLLEIRSHWRNRHPKDDMDEESYMDEAGDCYGDGDEDGCLADYDSEEEEEFDCEMFNRLLKRVPWSDTKLFS
RLAFLCNMAYVISDIKGSDSFASWQANLFFEPAKFEGTDVLVHRGIYEAAKGIYDQYMPEIISHLETYGDRAKLQFTGHSLGGSLSLLIHLMLLTRKVVK
PSTLRPVVTFGSPFIFCGGHKVLNTLGLDENHIHNVMMHRDIVPRAFSCNYPDHVAVLLKRLNGTFRSHPCLNKQKMLYSPLGKIFILQPEEESSPSHPL
LPSGSALYTFDDSESGKSSKSAALKAFLNRPHPLETLSNPTAYGSDGTILRDHDSGNYLKALHGLVRQNTKTVAWKAIKQQQEKVLWPLLKAPSPHSWNQ
HDNRSNDFNSGLLLNKEVMTKV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G61680 alpha/beta-Hydrolases superfam... Lus10040915
[exp]
0 1
AT4G29035 Plant self-incompatibility pro... Lus10022825
[exp]
8.5 0.8478
Lus10042653
[exp]
11.5 0.8274
Lus10038154
[exp]
12.1 0.8366
AT4G36250 ALDH3F1 aldehyde dehydrogenase 3F1 (.1... Lus10027372
[exp]
15.1 0.8212
Lus10008926
[exp]
16.1 0.7402
Lus10017869
[exp]
21.6 0.8210
AT3G01140 MYB NOK, ATMYB106 NOECK, myb domain protein 106 ... Lus10026620
[exp]
23.2 0.6922
AT1G73110 P-loop containing nucleoside t... Lus10024092
[exp]
23.7 0.8172
AT2G45650 MADS AGL6 AGAMOUS-like 6 (.1) Lus10015017
[exp]
27.5 0.8113
AT2G04570 GDSL-like Lipase/Acylhydrolase... Lus10015162
[exp]
31.1 0.8149

Lus10040915 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.