Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01030 898 / 0 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 508 / 2e-166 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 468 / 2e-150 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 470 / 3e-150 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G02750 459 / 2e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 448 / 4e-143 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G13650 450 / 1e-140 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 434 / 5e-138 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 436 / 3e-137 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G56690 423 / 2e-134 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009813 [exp] 1916 / 0 AT4G01030 820 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10016425 [exp] 474 / 7e-153 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10019735 [exp] 475 / 9e-153 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 470 / 7e-152 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 467 / 1e-149 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 464 / 2e-149 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 468 / 2e-148 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018978 [exp] 468 / 2e-147 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004892 [exp] 459 / 3e-146 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G097000 [exp] 1169 / 0 AT4G01030 906 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.002G021300 [exp] 505 / 1e-165 AT1G20230 852 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 486 / 2e-155 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 486 / 2e-155 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 477 / 1e-153 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G466066 [exp] 468 / 3e-150 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 465 / 2e-148 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 462 / 4e-148 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.003G006800 [exp] 459 / 3e-147 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G059400 [exp] 460 / 2e-146 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10040917 pacid=23179663 polypeptide=Lus10040917 locus=Lus10040917.g ID=Lus10040917.BGIv1.0 annot-version=v1.0 ATGAAGGGATCATCAGCGGCAGTGATTTCAATGGTGCTGGTGGTTGTGGTCGCCATGTTGGCCGCGATGCCAAGGGTTTCAGCAATAAACTGCGGACAAG TGAATTCCTACTTGGCACCATGCATTCCTTACTTGATCAACGGAGCCGCCGGCGGTGACCCTGCTCCGAAATGTTGCGAGGGAATCCTGAGCTTAAAAAC CAACACTCCTACGGTCGACGACCGCCGTGCGACTTGTGCTTGCCTCAAGGCCGCCGCCGGACGGTACCCAGTCAAGGACGACGCTGCTTCATCTCTCCCT ACTAAATGCAGCGTCGCTGTCAGCATCCCCATCTCCAAGGCCATCGACTGCCAGAGCCTACCTTCTTTAACGGTTGTATCCCAGAAATCACCCATGAACA AACTAGCTACGGTTCACCACTTCCAGGGGGTTCTGGATCCATATCCAGGAACCCATTTACATGCTTCCGTCTCTTCTTTAGCTCAACCTTCCGCCTCCCT TGAAACCGATACGCTTCCGTTGCTGCATTCCCAAAGTTTCAAGCACTTACGGAGCTCCTCGGTTGATGGCAGGCACCTCGTTTCTGTTAAATCAAAGCAT GCACAGGTGATAAAATCGTCCCCCGAAAAGTGGGGTTCTGATTCGGATGCTAGTGCTTTGGTTACTTCTTACTTGGAGATAGGCGATCGTGGATCAGCTG TAGTTGTGTTTCTGCTAGGTCTAGAGCAGAATTATGCCTCCTGGAGTTCGTTCTTGGAAGAATTCGAGAAGTTCGGAGGCGAATTAACGGAAATCCTCGT GGTTTACAGGGACTTACAATGTGGAGGGGTGAATTTTGGCAGCAGAGTTGTCACGTTTATGTTGAAAATTTGTGGGATTGAGAGTGATTACTGTCTAGGT TTGGAAATCCATGGTGATTTGATTAAGAAGGGGTTGGATTCCGATGCTTACGTGAGTCTCGCCTTGATGGGGTTTTATAGCAAGTTTAGTAGTGGAGTGG GAATTGCCAACCAGGTATTCGATGAATTGCCTCAACCAGATGATCACTTGTGGAACGAGGCAGTATTGTTGAACCTGCAGAGTGGCGAGTTCAGTCAGGC TATTGATCTCTTCAGGAGAATGCAGTTTTCGTGTTCGGAGGCTACTGCAAATTCTCGTACGATTGTGAAGATGTTGCAAGCATGTGGGAAAGAAAGAGCT CTGGATCAAGGGAAGCAGATCCATGGGTATATTCTAAAACTTGGATTCCACTCAAACTTGCTGATATGCAACTCATTGGTTACAATGTACTCTAGAAATC AGAAACTGGATCTAGCTACTAAGGCCTTTGATTCGATGAAAGACCCCGATTCGGCTTCCTGGAACGCGATTATCACCAGTCACGCCTTGCATGGAAATTT GAATGATGCTCAGAATCTTTTCCATGAGATGGAATTTTCTGGTACGAAACCGGACATCATTACTTGGAACTGTCTGTTGTCTGGCCATGCTCTACACGGT TTGTACGACAGAATCCTTACGATTCTGCAGCGGATGCAAATGGAAGGCTTTAGGCCGAATTCGAGCTCTGTTACGATCGTTCTTCAAGCTGTTATCGAAC TTGGACTCTTGAATTTCGGGAGACAAATTCATGGATATGTGATCAGAAACGGGCTTGATTTGGATGATGTTTATGTCGGGACTTCATTGTTAGACATGTA TATTAAGAATGATTCTTTGTCACTTGCTCAGGCAATGTTTGACAATATGAAGAACAAAAACATATTTGCTTGGAATGCACTGATATCAGGATACTCGTAC AAAGGCCGATACGATGATGCCAAAAAATTGTTGGCTAAAATGGAGAAGGAAGGAACCAAACCAGATTTAGTTACATGGAATGGTCTAGTTGCTGGGTATT CGATGCATGGAAAGAGTAAGGAAGCATTGGGCGTGATCGATGACATCAAAAGTTCGGGTTTAAGGCCGAATGTGGTTACATGGACTGCTCTCATATCAGG CTTTTCTCAGCAAGAAAACTACAGGATATCCTTGGACAATTTCATGCAAATGCGACGAGAAGGGGTTTCGCCTAATTCCGCCACGATTTCCAGCTTGCTA CGAACCTGTGGCGGCCTCTCTTTGTTGCAGAAGGGTAAAGAAGCTCACTGCTACAGCATCAAAAACCGGTTCGTCGAAGATGTTTACATAGCCACAGCTC TTATAGACATGTACAGCAAATCAGGCGACCTAAAGAGTGCATATGCAGTTTTCAAGAAGACCAAGAACAAAACTTTAGCCTGCTGGAACTGCATGATGAT GGGATTTGCGAATTTCGGGCTCGGAAGAGAAGTGATTTCGCTTTTCGACCGAATGCGAGGATCTGGTATCAATCCTGATGCCATATGCTTCACGGCTGTG CTCTCTGGTTGTAAGAACTCGGGTTTAGTGACAGAGGGATGGAAGCATTTCGACAGCATGAGCCAAAATTACGGGCTAAATCCGACAACTGAGCATTACT CTTGCATGGTGGATCTTTTGGGAAGAGCTGGCTATCTTGATGAAGCTTGGGACTTTATCAAAAGAATGCCTTTAAAACCCGATGTCACGGTGTGGGGTGC TTTTCTTGGATCCTGCAGAATCCACAGAAATTTGGAGTATGCAGAGATTGCAGCAAGACATCTTTATGAACTGGAACCTCATAATTCTGCTAACTATGTT TTAATGATGAGCTTATATGCCATATCAAACAGATGGGAAGATGTAGAGCGAACCAAAGATCGCATGTTCATTAAAGGGTTGAAACCCGGACAGATATGGA GCTGGATACAGATAGATGGACTAGTTCATGTGTTCACTGCTGGAGGAAAACCACATAAAGATGAAGGGGAGATTTACTTCGAGCTTTACCAATTGGTTTC GCGGATCAAAGAGCTCGGATATGTGCCTGACACGAACTGCATACTTCAGAATGTGGACGATGCGGAGAAAGAGAAGCTGCTTCTGGGTCACACAGAGAAA CTGGCAATAACTTATGGACTGATCAAGAGAAGTCGTAGCAATATGCCTATCCGAGTGATCAAGAACACTAGAACTTGTTTGGACTGCCACTCGGCCGCTA AACTAATATCCGTAGCCAAAGGCTGCGAGATTCTCCTACGAGATGGCGTTCGTTTCCACCATTTCAAGGAAGGTAAGTGTTCTTGCAATGACTACTGGTA G
AA sequence Show only first row Show all	>Lus10040917 pacid=23179663 polypeptide=Lus10040917 locus=Lus10040917.g ID=Lus10040917.BGIv1.0 annot-version=v1.0 MKGSSAAVISMVLVVVVAMLAAMPRVSAINCGQVNSYLAPCIPYLINGAAGGDPAPKCCEGILSLKTNTPTVDDRRATCACLKAAAGRYPVKDDAASSLP TKCSVAVSIPISKAIDCQSLPSLTVVSQKSPMNKLATVHHFQGVLDPYPGTHLHASVSSLAQPSASLETDTLPLLHSQSFKHLRSSSVDGRHLVSVKSKH AQVIKSSPEKWGSDSDASALVTSYLEIGDRGSAVVVFLLGLEQNYASWSSFLEEFEKFGGELTEILVVYRDLQCGGVNFGSRVVTFMLKICGIESDYCLG LEIHGDLIKKGLDSDAYVSLALMGFYSKFSSGVGIANQVFDELPQPDDHLWNEAVLLNLQSGEFSQAIDLFRRMQFSCSEATANSRTIVKMLQACGKERA LDQGKQIHGYILKLGFHSNLLICNSLVTMYSRNQKLDLATKAFDSMKDPDSASWNAIITSHALHGNLNDAQNLFHEMEFSGTKPDIITWNCLLSGHALHG LYDRILTILQRMQMEGFRPNSSSVTIVLQAVIELGLLNFGRQIHGYVIRNGLDLDDVYVGTSLLDMYIKNDSLSLAQAMFDNMKNKNIFAWNALISGYSY KGRYDDAKKLLAKMEKEGTKPDLVTWNGLVAGYSMHGKSKEALGVIDDIKSSGLRPNVVTWTALISGFSQQENYRISLDNFMQMRREGVSPNSATISSLL RTCGGLSLLQKGKEAHCYSIKNRFVEDVYIATALIDMYSKSGDLKSAYAVFKKTKNKTLACWNCMMMGFANFGLGREVISLFDRMRGSGINPDAICFTAV LSGCKNSGLVTEGWKHFDSMSQNYGLNPTTEHYSCMVDLLGRAGYLDEAWDFIKRMPLKPDVTVWGAFLGSCRIHRNLEYAEIAARHLYELEPHNSANYV LMMSLYAISNRWEDVERTKDRMFIKGLKPGQIWSWIQIDGLVHVFTAGGKPHKDEGEIYFELYQLVSRIKELGYVPDTNCILQNVDDAEKEKLLLGHTEK LAITYGLIKRSRSNMPIRVIKNTRTCLDCHSAAKLISVAKGCEILLRDGVRFHHFKEGKCSCNDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10040917 [exp]	0	1
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10009813 [exp]	1.0	0.9825
AT3G10840			alpha/beta-Hydrolases superfam...		Lus10028989 [exp]	1.4	0.9045
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Lus10042949 [exp]	2.4	0.8849
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10034484 [exp]	3.0	0.8990
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10020727 [exp]	3.5	0.8912
AT1G69160			unknown protein		Lus10026677 [exp]	4.2	0.8490
AT1G09940		HEMA2	Glutamyl-tRNA reductase family...		Lus10042932 [exp]	4.9	0.8589
AT2G47910		CRR6	chlororespiratory reduction 6 ...		Lus10038104 [exp]	7.3	0.8744
AT3G09150		ATHY2, GUN3, HY...	GENOMES UNCOUPLED 3, ARABIDOPS...		Lus10009713 [exp]	7.7	0.8666
AT4G36040		J11	DnaJ11, Chaperone DnaJ-domain ...		Lus10025060 [exp]	7.9	0.8406

Compare expression of checked genes

Lus10040917 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.