Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62900 279 / 7e-76 CW-type Zinc Finger (.1) AT1G02990 251 / 1e-67 unknown protein AT4G15730 187 / 9e-48 CW-type Zinc Finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009815 [exp] 1622 / 0 AT3G62900 301 / 4e-83 CW-type Zinc Finger (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G132900 [exp] 1026 / 0 AT3G62900 322 / 2e-89 CW-type Zinc Finger (.1) Potri.002G209409 [exp] 994 / 0 AT3G62900 285 / 7e-78 CW-type Zinc Finger (.1) Potri.013G020200 [exp] 217 / 1e-56 AT3G62900 174 / 1e-43 CW-type Zinc Finger (.1) Potri.005G028700 [exp] 200 / 2e-51 AT3G62900 176 / 5e-44 CW-type Zinc Finger (.1) Potri.004G035300 [exp] 47 / 9e-05 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [flax] [poplar] zf-CW CW-type Zinc Finger
Representative CDS sequence Show only first row Show all	>Lus10040919 pacid=23179690 polypeptide=Lus10040919 locus=Lus10040919.g ID=Lus10040919.BGIv1.0 annot-version=v1.0 ATGGAGGAGGAGGAGACGGAGCTTGAGGAAGGGGAGGCTGCTTGCTCTTACCAGAGTCATAATAACCACCACAGCAATGATGATGATGATGCCACCATGG ACCCTGATGTTGCTCTCTCTTACCTTGACGAGAAACTTCAACACGTCTTGGGGCACTTTCAAAAAGATTTTGAAGGTGGAGTTTCAGCAGAGAATTTAGG AGCCAAGTTTGGTGGTTATGGGTCATTTTTACCTAGCCACCGCTCACCTATTTGCTCTCACCCTCGGACTCCTCCGAAGGTCCAGCACGGTAGTAGTGTG CCTAAATCTCCAAGCCCTTCACAACTCGGGGCCGGTCATCGAAGCTCTGATTCATCAGGTGCACTGCAGACGGTAAGGCCTGGTCCTATCTCTGCCAGTG CAGTGACACAGCCTTCAACGAAGATGCCATCCTTGACTCTAGCTTCAAGCAAACAAGAAGGCCGTATGACATCTGCTCATGTTTCTGAGGAAGTCAATTT TCGAGAAACATTAAATAAGCAGTCTAATGGTTTGCCCGATTCGAAAAGGCTCAAGTTCCGCATCAAAGTAGGCTCTGATAAATTGTCGCTGAAAAATAAT GCTGCTATCTATAGTGGTCTTGGGCTTAATGTCTCCCCATCTTCATCTATGGAGGATAGCCCCTCGGAAAGTGAAGGAATGTCTAACGAACTTCACCATG CTTCATTTGAATCTCCTGGGCATATCATTCAGATAATGACTTCTTTCCCAGTGCATGAAGGAGTACTGCTATCACCACTTCCTGATGTTCTGATTCATTT GACCGAAAAGGAAAAACTTACAAGGGAATATGGATCCATATCTGTTTCAAAGCTTAATCCGAAAATGGTTGGACAGGAGAAAATGAAGTTTCTGGAGAGG TTTGATATTTCCTCAGAATCAAAAAATGACTATAAGAAGGTTTCTGAAACTGATATTGACATCATGTCAAGGATGGAGCTGGACCTTGACAGTCTGGCAT GTGATAGAGTAGTTTCTGATACCTTGAAACTGCCACTGCTATCTGGCCCATATTCTACCACGGGCGAATCCGTAAAAGGCTCAGGGAGGCCATTGCCATC GTCCAAAGAAGTAAGCAATGAGGGAGTGCAGGACCATGTTGTTATTGCCTCGGCAATGGCGCCATTAATTCCAATAGCTCCTAGAGAGGGTGGCTGCATT GTAAATCCCAAAGCCACTTCGGTTTGTGAGGGATGGGAAGACAAGAAAAATGAATCTCTTAATAGTGCTTTTGAATGCTCCAGGAAAGGTGGCCCTGACA GAGGAGAAAAATCTTCTAACTTCATGAAAATCGACACTAGTGTTTCTAAGGCTGGGAAAACTTTGAAAGCTGAGTCAACTGAATGGACAAAGCATAGAGA TGTCCGTAAAACTACGTCCCACAAATCAGAAGGTGAAAAGTTGCCTACCAGTAAAGAGCGTTTACCATCTGAAGGAAAAAAGAAATCAAAGAAAAGTCAA AGTCACGGCAATATGGTTGCTGACATTACAAAGGCTAGCGCTGTTGTTACTCCTTATTCGGCAGCAAGAAGTCGGAAGGGTTCACATGCAGATGATTCAA CAGAAGTGGAGTTAGGGGACCTCAAAGTCCAAAAAACTACGGTAAAAACCAGGGATCGATATAGTGAATTTTTTGGGGACATGGAACTAGAACAAGAAGA CAACCAGCCTAGTTCATTGGATACAAGTGTTAAAGATAGGCAGAACTCTTCTCGGATGGTTGAAAAGGAACCCCATGGTGTTAACAAAGCACTCAGCGAG AGATCAAAGGGCAAGAAAGTTGATAAGATGTTAGCATCAGAGGCTTATTCCAAACAGGTTTCAAGTGCGCCTCTGCACCCTCATGTTGGGCCTACATTGG ATGCCGCCCCTGCAAGTACAGCTCCTGTAGTGGAAGAACAGGACAACTGGGTTGAATGTGTTTTGTGTGAGACATGGCGACTTCTTCCACCTGGAAAGCA TCCAGATCTGCCCGAGAATTGGCAATGCAGTATGCTTGACTGGCTGCCTGACATGAATATATGTGAAATTGGAGAGGAAGAAACTACGAGAGCTGTTCGA GAATTGTACCCAGTTCCTTTTCCGTACAGTCTAGGTTCTTCGTCTGGCATTCCTGGTGGGTCTATGTCCAGAGTACCCTTGAGTAGTGTTCGACCCAGCG ACCCAATGGCTGTTACTGGTAGAAAAAAACATGGGTTGAAAGAACCATCAAATATAATAAATAGAGACGGTCCAACGCAGCTATCACATTCTGCAAGGAA GGCAGTGGTGACTAGTAAGCCGAATGGAACCTTATTCGAGGTGTGTCGGTCTCCTAGGGTAAGTGAATCTGATTTTGTGAAGTCAAACAGAACTAGTGAC GCAGCCATGGCGAAGCAAAAACCTAAGCTGAAAGAGAAGAACATTGCACATGAAAACATTTCATATGGAGGTGAGGTACGTCAATTAAAGATGAAAAGCA AGAGGGTCTCGGATGAAGACTTGGTTGAAGCATCCAAGAAGATGAAGACTGAATGTTCCTCAGAAGATCCGATGTCTGATTATGTAATTGAAAAGGTTGG ACTTAGAATTACCTCTGGGAAAATGCGGCCTAAACACTCTAATCACTCTTCTTCTAAGGACTCAAAGAATGATGAAAAAGATCAGAAAAAATTATCCGCT AAAATGCCAAAGGATGAACTCCATGGTACGTTGGATGTTGGCTCTACAGATAGGAGGAAGCACAGTGGTGGAGAAATTGTTAAAAAAAGGAAAATAAAAG AAGAGTACGATGCTAATTTGCCTTCATCTTCCCCTGTAAGTACAGGACTCGAACTCCAGGAAGGAGGAATCACATTAAAGGAAGAGTTCAGTGATAGTGA TTACAGAAAAGAGAAGAAGGTACGGTTGTCCATCTCTGCAGGAAAGGAAGCTAGTGCTGTTAAAGGTGATGGTAGAACAGAAAAGAAGGGCAGTCAGGGC AAGAAACAGCAATCAATACAAGATTTCGGAAGCACATTGTCACAAAGGAGCTTGGATGGTGTTGAATCAATGAAAAAGGATTCTGGAACTCGACGTCCAC CAGTGGCTGCTACCTCTAGCTCTTCTAAAGTTTCTGGCTCCCACAAGATGAAAGGCAACATCCCTGATATAAAAGGCTCCCCGGTAGAATCCGTTTCATC ATTACCTATCGGCACACCAAAACCAGATAAACATATGTCGACAGCAAGAAAGAATGAGAGACATTCCAACAGGAAATGCTCAGATGCGGAAGATGAAGGG TTCAGTGATCGATTTGGAAATGGGGAGAAGGATAAAACTATTGATTTCAGTCATGGGTCCCTTGAGCCTTCTTACGTGGATTTTCCGGACAAGGACTCTG GTCAAGTTTTACCATGTGCAAAAGCTAAACAACAGATAGTGCCTTCTGTTGATGTCACAAATGGTCATGCAGATTCTTCGGGGAAAGATACTCAGCGTGA TAAGTTACAAATTGTTGCCAAATGTCACAATGAGGAGAGGCCAAGTGGGAATCATTCTCAATCAAATGGGTCTCGCCCAAGGAAGTCTGCAAAGGGATCA TCATCTTCAAGGTCTAAGGACCCCAGTTTTGATTCATCTCTTGACAATGCAAGACCCAGAGTGTCTGATTCTACCCCTGCCCATGCACCATATTTTGAGG TACAACCTGTGGATGATAAAAACAAGGCAGTTGAGAAGATCGGTTCCAAGCATGACAGAAAAGAGAGCAGGTCCATCGATAAGAACTCTGCTGGAGTAGC AGGGAATGGAAAAACAGATGCTCGTTCTAACTTGGGTGGTCACAGCAGAGGTGATAAAGGACTTGCTAATGATAGTCATGATGCAAAGTCCAGTCTACCA TCGGAAGATAGGATGACTTCAGGTAAAGAAAAGTCGATATCAGCAAATCCATGTGGGGGAATACAAGAGGAAAAATTACTTTCTGTTCCTGGTACTCAAA AAGGAAATGGAGGGAAAGGCTTTTCAATTAGTACCTCTGAGGCGAACAATCCTTCCAAATCTCAGAAGCAGGCCAGGAAGGTTGACTATCCCCCAAATGG GATAAATCATAGTGTAGGGAACCAGATGTCAAATGGACTCCGGATCAGGCATCATGATGCCCCTAGTCCAGTTAAAAGGGATTCCTCCAGTCAGGCTGCT AACAATGCATTGAAAGAGGCTAAAAATCTAAAGCACCTGGCAGACCGTATGAAGAATTCTGGGTCGATTAAGGAAAGTATGAAATTTTATTTTGAAGCAA GTTTGAAATTTCTTCATGGAGCTTTTATTTTGGAATCTGGAAGCAATGAAAACGCAAAAGCAGATTTGATTCAGTCACTGACTATCTATACTACAACTGC CAAACTTTTTGAGTTTTGTGCCCATGAATATGAGAAGTCCAGAGACATGGCTGCTGCTGCTCTTGCCTACAAATGCATGGAGGTGGCATACTTGAGGGTA GTACATGGTTCGCATTATACTGCAAACAGAGATAGACATGAGTTGCAGATGGCTCTACAGATGATTCCTACAGGCGAGTCACCTTCCTCGTCTGCCTCTG ATATTGACAATTTAAATCACCCAACAACAGTGGATAAAGTAACCTTAGGAAAAGGTATCAGCTCTCCTCAAGTGACTGGAAGCCTCATCATCCCTGGCAG AAATCGTCCCCATGTCACCCGGATGTGTACTTTTACACAGAATGTAAACCTTGCAATGGAAGCATCAAGAAAATCCCGGACGGCTTTTGCAGCAGCGAGC ATAAGCTTGGGAGACTCCCAGAGCGGGGAGGGTATTACTTCCATCAAAACGGCTCTTGATTTTAGCTTCCATGATGTTGAAGGATTATTACGGCTGATAC GGCTTGCAGTTGAAGCTATAAGTCGGTAA
AA sequence Show only first row Show all	>Lus10040919 pacid=23179690 polypeptide=Lus10040919 locus=Lus10040919.g ID=Lus10040919.BGIv1.0 annot-version=v1.0 MEEEETELEEGEAACSYQSHNNHHSNDDDDATMDPDVALSYLDEKLQHVLGHFQKDFEGGVSAENLGAKFGGYGSFLPSHRSPICSHPRTPPKVQHGSSV PKSPSPSQLGAGHRSSDSSGALQTVRPGPISASAVTQPSTKMPSLTLASSKQEGRMTSAHVSEEVNFRETLNKQSNGLPDSKRLKFRIKVGSDKLSLKNN AAIYSGLGLNVSPSSSMEDSPSESEGMSNELHHASFESPGHIIQIMTSFPVHEGVLLSPLPDVLIHLTEKEKLTREYGSISVSKLNPKMVGQEKMKFLER FDISSESKNDYKKVSETDIDIMSRMELDLDSLACDRVVSDTLKLPLLSGPYSTTGESVKGSGRPLPSSKEVSNEGVQDHVVIASAMAPLIPIAPREGGCI VNPKATSVCEGWEDKKNESLNSAFECSRKGGPDRGEKSSNFMKIDTSVSKAGKTLKAESTEWTKHRDVRKTTSHKSEGEKLPTSKERLPSEGKKKSKKSQ SHGNMVADITKASAVVTPYSAARSRKGSHADDSTEVELGDLKVQKTTVKTRDRYSEFFGDMELEQEDNQPSSLDTSVKDRQNSSRMVEKEPHGVNKALSE RSKGKKVDKMLASEAYSKQVSSAPLHPHVGPTLDAAPASTAPVVEEQDNWVECVLCETWRLLPPGKHPDLPENWQCSMLDWLPDMNICEIGEEETTRAVR ELYPVPFPYSLGSSSGIPGGSMSRVPLSSVRPSDPMAVTGRKKHGLKEPSNIINRDGPTQLSHSARKAVVTSKPNGTLFEVCRSPRVSESDFVKSNRTSD AAMAKQKPKLKEKNIAHENISYGGEVRQLKMKSKRVSDEDLVEASKKMKTECSSEDPMSDYVIEKVGLRITSGKMRPKHSNHSSSKDSKNDEKDQKKLSA KMPKDELHGTLDVGSTDRRKHSGGEIVKKRKIKEEYDANLPSSSPVSTGLELQEGGITLKEEFSDSDYRKEKKVRLSISAGKEASAVKGDGRTEKKGSQG KKQQSIQDFGSTLSQRSLDGVESMKKDSGTRRPPVAATSSSSKVSGSHKMKGNIPDIKGSPVESVSSLPIGTPKPDKHMSTARKNERHSNRKCSDAEDEG FSDRFGNGEKDKTIDFSHGSLEPSYVDFPDKDSGQVLPCAKAKQQIVPSVDVTNGHADSSGKDTQRDKLQIVAKCHNEERPSGNHSQSNGSRPRKSAKGS SSSRSKDPSFDSSLDNARPRVSDSTPAHAPYFEVQPVDDKNKAVEKIGSKHDRKESRSIDKNSAGVAGNGKTDARSNLGGHSRGDKGLANDSHDAKSSLP SEDRMTSGKEKSISANPCGGIQEEKLLSVPGTQKGNGGKGFSISTSEANNPSKSQKQARKVDYPPNGINHSVGNQMSNGLRIRHHDAPSPVKRDSSSQAA NNALKEAKNLKHLADRMKNSGSIKESMKFYFEASLKFLHGAFILESGSNENAKADLIQSLTIYTTTAKLFEFCAHEYEKSRDMAAAALAYKCMEVAYLRV VHGSHYTANRDRHELQMALQMIPTGESPSSSASDIDNLNHPTTVDKVTLGKGISSPQVTGSLIIPGRNRPHVTRMCTFTQNVNLAMEASRKSRTAFAAAS ISLGDSQSGEGITSIKTALDFSFHDVEGLLRLIRLAVEAISR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G62900			CW-type Zinc Finger (.1)		Lus10040919 [exp]	0	1
AT3G62900			CW-type Zinc Finger (.1)		Lus10009815 [exp]	1.0	0.9589
AT3G22380		TIC	time for coffee (.1.2)		Lus10010535 [exp]	1.4	0.9225
AT3G14270		FAB1B	FORMS APLOID AND BINUCLEATE CE...		Lus10038129 [exp]	2.4	0.9158
AT3G48195			Phox (PX) domain-containing pr...		Lus10042108 [exp]	3.2	0.8751
AT1G72390			unknown protein		Lus10013169 [exp]	5.5	0.8825
AT5G04480			UDP-Glycosyltransferase superf...		Lus10017452 [exp]	5.7	0.8442
AT3G23980		KOS1, BLI	KOLD SENSITIV 1, BLISTER (.1)		Lus10023694 [exp]	5.7	0.8640
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	8.9	0.8975
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10030176 [exp]	11.0	0.8654
AT4G33240		FAB1A	FORMS APLOID AND BINUCLEATE CE...		Lus10005176 [exp]	11.0	0.8467

Compare expression of checked genes

Lus10040919 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.