Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02560 628 / 0 HD LD luminidependens, Homeodomain-like superfamily protein (.1.2) AT1G19860 62 / 9e-10 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) AT5G66270 46 / 0.0001 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009816 [exp] 1599 / 0 AT4G02560 559 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2) Lus10024316 [exp] 57 / 6e-08 AT1G19860 261 / 1e-83 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10012404 [exp] 56 / 2e-07 AT1G19860 256 / 1e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209216 [exp] 650 / 0 AT4G02560 364 / 4e-109 luminidependens, Homeodomain-like superfamily protein (.1.2) Potri.014G132800 [exp] 633 / 0 AT4G02560 349 / 8e-104 luminidependens, Homeodomain-like superfamily protein (.1.2) Potri.005G116001 [exp] 62 / 5e-10 AT1G19860 122 / 3e-32 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.002G025100 [exp] 56 / 9e-08 AT1G19860 319 / 8e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G236300 [exp] 56 / 9e-08 AT1G19860 318 / 2e-105 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G013600 [exp] 52 / 2e-06 AT1G19860 109 / 1e-25 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10040921 pacid=23179648 polypeptide=Lus10040921 locus=Lus10040921.g ID=Lus10040921.BGIv1.0 annot-version=v1.0 ATGGCGGGCTTAAAGGAGGATTTCGCGGAGATGGAGATTGGGACCACCGCTGCGTCGTTTCAGAGGTTCATGGATTCGCAGAAGGATCTTTTCCACAGCC AGGTCGACCAGCTTCAGAGAATTGTCGTTACTCAGTGCAAGCTCACTGGTGTCAATCCTCTTTCTCAAGAAATGGCTGCTGGTGCGCTTTCCATTAATAT TGGCAAAAGACCTAGAGATTTGCTAAATCCAAAGGCCATTAAGTACATGCAAGCAGTTTTCTCTATCAAAGACGCTATCAGTAAAAAGGAATCTCGTGAA ATTAGTGCTCAATTTAGCATCACTGTGACACAGGTTCGTGAGTTTTTTACTAGCCAACGTTCGCGAGTAAGGAGACTTGTCAGGCTTGCAAGGGAAAAGG GAATCCAAGCTAATTCACTTAAAGAACCGGAAAATAACCTTCAAATAGATGGGATTCCTAGAGGATCTAATTCAGTTTCCTTAAACCTTATTGTCCCTGA TACGGTTCCTGCAAGCTCAAATGGCCCAACTGATGTTACCTCAAGCACTGCGTGCCCCTATACAGCGCCCTTACGATCTGTTGGTCCTAACTCTGTCCCT CTGACTGCTGCGAACCTTAATCCTGAAATACGAACCTCTGTCGGCTCTGACTACATTCCATTAAATTGCATCACACCGGATTCAGAACCATTGCTGTCCG AGGGACCTGCCAATTGTGAAGGAGGACAATTTTTTTCAAAACAGGAAGAGATATTACCAGGTTTAGATGACTCAGAAAAGCATTTTGTTGAAACTATTTT CGGTTTGTTGAAGAGAGAAGAGACCTTTGGTGGCCAGGTCAAACTGATGGAGTGGGTCTTGCAAATTCAGAATCTCACAGTACTAAACTGGTTCCTAACT GAAGGTGGGGTTATGATATTGGCAACGTGGCTGACTCAAGCCGCTGCAGAAGAACAAACAAGTGTTCTGCTTGTTGCCCTTAGGGTTCTCTGCCACTTGC CTTTGCATAATGCTTTTCCCGAGCATATGTCTGCTATCCTGCATAGTGTAAATACACTGAGGTTTTACAGGACATCAGACATATCGAGCAGGGCTAGGAT TTTGTTAGCGAAGTGGACCAAGTTGTTCGCACGTAGTCAGTCTCTTAGAAAACCTAATGGCGTTGGGTCTTCTATTGATGCACAGGATATGATACTGAAG AAAAGCATTGATGAAATAATGAGCAATGGATTTTCACAGACTGATATTGGTTACACAGAAGGTAGTCTTGCTCTTCCCTCTGGGAATTCAGTGAATATCA GGAGGATGGAGTCTTCACAAACAATGAAGTTATTGCCAGCTTCTTCTGATGATTCAAGCAGGAAGTACATTTTAGGATCTCCATCTCGTTTTGTTTACTT TTTCGTGTCCTCTCTTTTAATCATTTGGACTAGCATTGAAATGATCCATCCTGACCCAATAAGAGAGCTAGTAGCAGATACCAGAGAGCGTAGAAAAGTT CAGCTAGTGGAACAGCCTGGCCAGAAACCATCTTCTCGAAGCCCTCAAGGAGCGAAATCTGGGTCGACTAGTCAAGGCCGTCCAATGTCTGCTGATGATA TCCAAAAAGCAAAAATGCGTGCCTTATACATGCAGAGCAAGTATGGGAGGAAATCTAATTTGTCTAATGGTAGCAACAGTATGAAGAACGGCATAGTTGA CAAAATGCCACCTGTGTCAATAGGCAGCTCATCTCAAGTTTCGAAGGTTCTTGCTAAACTAAAGAATGAAGAACCCAAGGAACCTGTGATAGCTGCTGCG CCTACAAGTATTTGTAAGGGTGAACACCTGGATAATACTATGCTAAAAGTAGAATCACAGGTGGTTTCCAAGGCTCGTGCTGAACCAACGAATGAAGAAC CCAAGGAACGAGTGATAGCTGCTGCGCCTATGAGTATTTGTAAGACAGAACACCCGGATACTACTATGCTAAAAGTAGAATCAACGGTGTTTTCGAAGGC TCTTGCTGAACCAAAGGATGAAGAAGTGAAGGAACCTGTGATATCTACGCCTAAGAGTACTTGTAAGGATGAACACCAGCATGCTACGGAGCAAAAAGTA GCATCGAACATGCCAGTTAAGCAGATATGTTCCAGGCCCCAGATCCGATGGCATTCACCCACAGAGGTAAAACTCGATGTTGAGTGGCGGGTCGGCACGG GCGAGTTCAGCAAGGAAGTTGAGGTCCAGAAAAATAGAAATCGAAGAGAGATGGAAACTATATACAGGGCTGTCAATGAGATACCATCTAATCCCAAGGA ACCATGGGACCTTGACATGGACTATGACGACTCGCTAACCCCTGAAATTCCAATTGAACAACAACCCGATGCAGATGGTACAGATACGCAGATTCCTGAT AACCAACTTGAGAATCCAGTGGCTGCTGCTCCCACCATGGCTAATGGTGGGGTTGCAGCAGTGGCAGAGCCAGATCTAGAGCTGCTTGCTGTTCTTTTGA AGAATCCAGCACTAGTTTTTGCTCTGACGTCTGGACAAGCAGGGAATCTATCTAGTGACGACACTGTGAGGTTGCTTGAGATGATGAAGACTGGTGGTAT TGCTTTAGGTAATAGTGTAAATGAATCAGATGGGAAGGTTGGAGAAGTATCTCTCCCGTCGCCGACTCCTTCGAGCAACAATCCTAGAACGAGCGGATGG AAGCCAGAAGTTGCGAGGAACCCATTTTCGCAGCGGAATCCATTGGGAAATGGAGGACGAGCAGCAGGTTTTGTTGATACTACCACGGTTACCAGCTCAG TGCATCCAGAGAATCGAGTTACCACAAACATGGGTTTCTTACCACAAAAGCATTCTCACGAGCAATACTACCATCACCAAAGTTTCACAGATCATCCCAG GATCCAGACTTCAACTTCAGACAGCCCATCAACATCCTTTGTAGACAGACATCATACTCGATTCCAGCAACCATCATTGTCATCAGCCACATTGCTGCAT CAGCAAACGTACATGAGTAATGAATCCTCATACTTGTCTAGGCCAGTTGCTGGGAATGTCGTCAATGTAGGTCGTGGCTCTCCTGCTGCCGCTTCCAATG ATTCCTGGCGAGTGAGGCAGGGGAGTGTAGTTGCGTCGAATTCATACTCTTCTAATGTTGTAAATCAGAATCTATACAACGGAACTAGCACATCCTACGG AGGAAATCAGTCACGAGCTGGTCACTTACAGTATGGGGCGGCGGGGTTCGAGTCGTGGGGTCCAGAGAATAGTCATTGTAATACTGATAGGAGTAGCAGT GAACAAGTGGTGGGTAGGGGATTAGGAGGCAGGAGGGGATCAGAATGGCCTGATGATAACCAACGGCCCACAAGGCACAGAAACTTGGCCAGTTCGTCTG GGTTTCAAGATCATGACTCAAACAATAACAGAAGGTGGCCATGA
AA sequence Show only first row Show all	>Lus10040921 pacid=23179648 polypeptide=Lus10040921 locus=Lus10040921.g ID=Lus10040921.BGIv1.0 annot-version=v1.0 MAGLKEDFAEMEIGTTAASFQRFMDSQKDLFHSQVDQLQRIVVTQCKLTGVNPLSQEMAAGALSINIGKRPRDLLNPKAIKYMQAVFSIKDAISKKESRE ISAQFSITVTQVREFFTSQRSRVRRLVRLAREKGIQANSLKEPENNLQIDGIPRGSNSVSLNLIVPDTVPASSNGPTDVTSSTACPYTAPLRSVGPNSVP LTAANLNPEIRTSVGSDYIPLNCITPDSEPLLSEGPANCEGGQFFSKQEEILPGLDDSEKHFVETIFGLLKREETFGGQVKLMEWVLQIQNLTVLNWFLT EGGVMILATWLTQAAAEEQTSVLLVALRVLCHLPLHNAFPEHMSAILHSVNTLRFYRTSDISSRARILLAKWTKLFARSQSLRKPNGVGSSIDAQDMILK KSIDEIMSNGFSQTDIGYTEGSLALPSGNSVNIRRMESSQTMKLLPASSDDSSRKYILGSPSRFVYFFVSSLLIIWTSIEMIHPDPIRELVADTRERRKV QLVEQPGQKPSSRSPQGAKSGSTSQGRPMSADDIQKAKMRALYMQSKYGRKSNLSNGSNSMKNGIVDKMPPVSIGSSSQVSKVLAKLKNEEPKEPVIAAA PTSICKGEHLDNTMLKVESQVVSKARAEPTNEEPKERVIAAAPMSICKTEHPDTTMLKVESTVFSKALAEPKDEEVKEPVISTPKSTCKDEHQHATEQKV ASNMPVKQICSRPQIRWHSPTEVKLDVEWRVGTGEFSKEVEVQKNRNRREMETIYRAVNEIPSNPKEPWDLDMDYDDSLTPEIPIEQQPDADGTDTQIPD NQLENPVAAAPTMANGGVAAVAEPDLELLAVLLKNPALVFALTSGQAGNLSSDDTVRLLEMMKTGGIALGNSVNESDGKVGEVSLPSPTPSSNNPRTSGW KPEVARNPFSQRNPLGNGGRAAGFVDTTTVTSSVHPENRVTTNMGFLPQKHSHEQYYHHQSFTDHPRIQTSTSDSPSTSFVDRHHTRFQQPSLSSATLLH QQTYMSNESSYLSRPVAGNVVNVGRGSPAAASNDSWRVRQGSVVASNSYSSNVVNQNLYNGTSTSYGGNQSRAGHLQYGAAGFESWGPENSHCNTDRSSS EQVVGRGLGGRRGSEWPDDNQRPTRHRNLASSSGFQDHDSNNNRRWP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10040921 [exp]	0	1
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	1.4	0.8520
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031223 [exp]	2.8	0.8194
AT3G32940			RNA-binding KH domain-containi...		Lus10013751 [exp]	5.5	0.8174
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034263 [exp]	6.0	0.8087
AT2G31190		WXR1, RUS2	weak auxin response1, ROOT UV-...		Lus10003558 [exp]	6.9	0.8100
AT4G30870		ATMUS81	ARABIDOPSIS THALIANA MMS AND U...		Lus10039566 [exp]	13.4	0.7966
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Lus10024447 [exp]	15.9	0.7991
AT3G09100			mRNA capping enzyme family pro...		Lus10035534 [exp]	18.7	0.8172
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10009612 [exp]	19.0	0.8096
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10005209 [exp]	20.8	0.7808

Compare expression of checked genes

Lus10040921 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.