Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47830 502 / 7e-176 Cation efflux family protein (.1.2) AT3G58060 49 / 4e-06 Cation efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009817 [exp] 279 / 5e-92 AT2G47830 190 / 2e-58 Cation efflux family protein (.1.2) Lus10000033 [exp] 263 / 4e-86 AT2G47830 186 / 3e-57 Cation efflux family protein (.1.2) Lus10016239 [exp] 58 / 7e-09 AT3G58060 574 / 0.0 Cation efflux family protein (.1) Lus10029304 [exp] 56 / 3e-08 AT3G58060 577 / 0.0 Cation efflux family protein (.1) Lus10001768 [exp] 54 / 2e-07 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Lus10009598 [exp] 54 / 2e-07 AT1G16310 518 / 0.0 Cation efflux family protein (.1) Lus10040318 [exp] 47 / 3e-05 AT2G39450 587 / 0.0 Cation efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209023 [exp] 537 / 0 AT2G47830 495 / 1e-172 Cation efflux family protein (.1.2) Potri.003G215600 [exp] 61 / 7e-10 AT3G58060 521 / 0.0 Cation efflux family protein (.1) Potri.008G083600 [exp] 59 / 2e-09 AT1G16310 521 / 0.0 Cation efflux family protein (.1) Potri.001G010300 [exp] 58 / 8e-09 AT3G58060 479 / 4e-169 Cation efflux family protein (.1) Potri.010G172900 [exp] 56 / 3e-08 AT1G16310 572 / 0.0 Cation efflux family protein (.1) Potri.010G172600 [exp] 52 / 4e-07 AT1G16310 504 / 2e-178 Cation efflux family protein (.1) Potri.010G172800 [exp] 52 / 5e-07 AT1G16310 585 / 0.0 Cation efflux family protein (.1) Potri.010G211300 [exp] 50 / 2e-06 AT2G39450 598 / 0.0 Cation efflux family protein (.1) Potri.008G049600 [exp] 49 / 7e-06 AT2G39450 595 / 0.0 Cation efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01545 [flax] [poplar] Cation_efflux Cation efflux family
Representative CDS sequence Show only first row Show all	>Lus10040922 pacid=23179582 polypeptide=Lus10040922 locus=Lus10040922.g ID=Lus10040922.BGIv1.0 annot-version=v1.0 ATGGGATTCAGATTCCGCAGTTTCAATCCCGTCTTCAGATCATGCCTCCATCGAGAAGTTCTGCGCCCTTCTTCAGCTTCTCTTTCTCTTCTTCCTTCCT CAGCTCCCCTTGTCCCTCACCTTCCTCATCCCAAGATCCCCATCCGCTGGCATTTCGGCCACTCCCATTCCGACCCCGAACACCACCACCTCAATACTTC CGACGCTGGCGAGGAGGGTGAAAAGATCTTCCGTCTCGGCTTTGCCGCAGATATTGGGTTATCCATCGGGAAGGCCTTCACTGGATATTTGACTGGGAGT ACTGCTATTATTGCCGATGCCGCTCATTCTATCTCGGACGTGGTTCTTAGTGGAGTTGCCTTGTGGTCATTCAAAGCTGGGATGACTCCTAAAGATAGAG AACATCCTTATGGACACGGTAAATTTGAAAGTCTTGGCGCTCTAGGAATTTCTTCCATGCTTCTAGTTACTGCTGGTGGCATTGCCTGGCATGCCGTTGA TGTTCTTATTCCATTAGTGTCCGTTGCTCCTGAAGTGATAAACCATTCATCCAGTATCGAAGGTCTGCACAACCATGTCCATGGTGGGCATCATCATGGG ATTGACTTGGAGCACCCAATCCTTGCATTCAGTATGGCTGCTGTGTCCATATCGGTGAAAGAAGGTCTGTACTGGATAACGAAAAGAGCCGGGGATAAGC TGGGCAGTGGACTAATGAAAGCAAATGCATGGCATCACCGTGCAGATGCCATTTCCTCTGTTGTTGCTCTAATTGGGGTTGGAGGCTCTCTCTTAGGGGT CAAGTTTCTGGATCCAATTGCTGGTCTCTTTGTTTCTGGCATGATACTGAAAGCTGGATTACAGACTGGATATCAAAGTGTCTTGGAACTGGTGGATGCT GCAATTCCTGGGGAACATTTGGATCACATGAGGCAAACAATCCTCCGAGTTACTGGAGTTTCCGGGTGCCATCGATTGCGGGGTAGGAGGGCTGGTTCAT ATCTATTTCTGGATGTTCATATTGAGGTAGATCCCTTTTGTAGTGTTAGCGCCGCACATGGAATTGGTGAAAATGTTCGTAAGGAAATTCATGAGTCCCA TCCTGAGATAGCTGAAGTTTTCATCCACATAGACCCTGCGTTTCTGGAGTCGCCTCTCGACATGCCATACAACTTGGAGGAAAAAGAACAGTATTCTTAC CTCGAGGACAAATACATTGAAGCAATTGTAAACAACATTTTCGTCTCCAAGTTCCAGGAGAACATGAAGGTTGACAGGGTGACACGGCATCTACTCCATG GGAAGACTCTGCTTGAAATTGAAGTTGATATGCCACAGACCATCACAATACAGGACGCAAAGGGAGTAGCAAAAGAGGCAGAGCAAGCGATCCTAAAGGA AGCAAGTAATGTCATCCAAGTAAGCTTGCAGTTAAAACTTGGAACTCCAATGCCAAAGTTCAAAACTTGA
AA sequence Show only first row Show all	>Lus10040922 pacid=23179582 polypeptide=Lus10040922 locus=Lus10040922.g ID=Lus10040922.BGIv1.0 annot-version=v1.0 MGFRFRSFNPVFRSCLHREVLRPSSASLSLLPSSAPLVPHLPHPKIPIRWHFGHSHSDPEHHHLNTSDAGEEGEKIFRLGFAADIGLSIGKAFTGYLTGS TAIIADAAHSISDVVLSGVALWSFKAGMTPKDREHPYGHGKFESLGALGISSMLLVTAGGIAWHAVDVLIPLVSVAPEVINHSSSIEGLHNHVHGGHHHG IDLEHPILAFSMAAVSISVKEGLYWITKRAGDKLGSGLMKANAWHHRADAISSVVALIGVGGSLLGVKFLDPIAGLFVSGMILKAGLQTGYQSVLELVDA AIPGEHLDHMRQTILRVTGVSGCHRLRGRRAGSYLFLDVHIEVDPFCSVSAAHGIGENVRKEIHESHPEIAEVFIHIDPAFLESPLDMPYNLEEKEQYSY LEDKYIEAIVNNIFVSKFQENMKVDRVTRHLLHGKTLLEIEVDMPQTITIQDAKGVAKEAEQAILKEASNVIQVSLQLKLGTPMPKFKT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47830			Cation efflux family protein (...		Lus10040922 [exp]	0	1
AT2G44970			alpha/beta-Hydrolases superfam...		Lus10011122 [exp]	1.0	0.8243
AT5G42470			unknown protein		Lus10033139 [exp]	1.4	0.8039
AT3G47990		SIS3	SUGAR-INSENSITIVE 3 (.1)		Lus10002369 [exp]	3.3	0.7281
AT3G27027			Protein of unknown function (D...		Lus10032029 [exp]	6.9	0.7610
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	8.9	0.7512
AT5G48840		ATPTS, PANC	ARABIDOPSIS THALIANA PANTOTHEN...		Lus10025932 [exp]	10.4	0.7794
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013075 [exp]	14.9	0.7254
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10029336 [exp]	15.9	0.7355
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	16.0	0.7347
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10041851 [exp]	17.3	0.7481

Compare expression of checked genes

Lus10040922 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.