Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45760 98 / 4e-25 BAL, BAP2 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) AT3G61190 87 / 2e-21 BAP1 BON association protein 1 (.1.2) AT1G09070 50 / 4e-07 (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, (AT)SRC2, soybean gene regulated by cold-2 (.1) AT4G15755 47 / 3e-06 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G04540 44 / 4e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G33320 43 / 9e-05 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT4G01200 41 / 0.0003 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009818 [exp] 353 / 1e-125 AT2G45760 120 / 6e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10036571 [exp] 223 / 5e-74 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10040923 [exp] 215 / 5e-71 AT2G45760 110 / 4e-30 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Lus10003570 [exp] 44 / 6e-05 AT2G33320 222 / 7e-67 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10032780 [exp] 42 / 0.0002 AT2G33320 227 / 1e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155300 [exp] 135 / 4e-40 AT2G45760 120 / 4e-34 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.014G078700 [exp] 134 / 2e-39 AT2G45760 116 / 1e-32 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.014G078600 [exp] 124 / 7e-36 AT2G45760 105 / 2e-28 BON ASSOCIATION PROTEIN 1-LIKE, BON association protein 2 (.1) Potri.010G024200 [exp] 57 / 7e-10 AT3G16510 135 / 5e-37 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.001G070400 [exp] 53 / 4e-08 AT3G16510 82 / 4e-17 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.003G160400 [exp] 52 / 5e-08 AT3G16510 72 / 8e-14 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.013G107175 [exp] 47 / 3e-06 AT3G16510 77 / 1e-15 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.005G026700 [exp] 45 / 2e-05 AT1G09070 148 / 3e-42 soybean gene regulated by cold-2 (.1) Potri.013G048400 [exp] 43 / 9e-05 AT2G33320 211 / 6e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.008G172300 [exp] 41 / 0.0004 AT2G33320 265 / 8e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040924 pacid=23179723 polypeptide=Lus10040924 locus=Lus10040924.g ID=Lus10040924.BGIv1.0 annot-version=v1.0 ATGGCGAAATCCAGCAGGAGTCTCGAATTCACCATTCTGTCCGCGGAAGACCTCCGCATCGATGGAAGGCCCGTCAAAAAGAACGCCTTTGCCCTGGTGA GAACCGACCAATTCAATTCCAAATCCACCGCCGCCGATCTCAACGGCGGGAGCTACCCTCGGTGGAACGAGAAGGTAGTCGTGGATTTACCCAGAGGGAC TCTGTCTGTGACAGTTGAGGTACTCCAATATTGCAAGGTCGGGTCCGCCGGGAACAGAGTGATCGCTACGGTCAGCGTTCCGGTCTCTGAATTTTTGGGA CAATTGACGCCGGAGATTAATTACCTCAATTTTCTCAGCTACAGGTTGCGAGATCCCCGCGGGGTCAAGAACGGAATTATTAATTTTTCCGTTAAAGTTA ACGGCGGCGGCGGAGAAAGAAATGGAGATTACGGTTGTTGTTCTGTATCCGCAAGGACGAAAGACGCGGCGGAATTTGGAGGCAATTTTGCGCCGTCGTT GTCGTCCTGCTTGGTTCCTGCTTCTTGGAGGACGCCGTCGTACCCGTGGGCAGTCCCGGTGGCGCGTGATCGGAATGGCTATGGTGGCGGTGGAGTGGTT ACCGGCGTTCCAGTGTGGGGCGCCAACTCACGTTTCATTTAG
AA sequence Show only first row Show all	>Lus10040924 pacid=23179723 polypeptide=Lus10040924 locus=Lus10040924.g ID=Lus10040924.BGIv1.0 annot-version=v1.0 MAKSSRSLEFTILSAEDLRIDGRPVKKNAFALVRTDQFNSKSTAADLNGGSYPRWNEKVVVDLPRGTLSVTVEVLQYCKVGSAGNRVIATVSVPVSEFLG QLTPEINYLNFLSYRLRDPRGVKNGIINFSVKVNGGGGERNGDYGCCSVSARTKDAAEFGGNFAPSLSSCLVPASWRTPSYPWAVPVARDRNGYGGGGVV TGVPVWGANSRFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10040924 [exp]	0	1
AT1G32920			unknown protein		Lus10001526 [exp]	1.4	0.9056
AT5G59730		ATEXO70H7	exocyst subunit exo70 family p...		Lus10005436 [exp]	3.0	0.8920
AT1G76070			unknown protein		Lus10021840 [exp]	4.5	0.8897
AT5G54165			unknown protein		Lus10023231 [exp]	4.7	0.8949
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10010943 [exp]	5.5	0.8596
AT1G24110			Peroxidase superfamily protein...		Lus10010716 [exp]	8.2	0.7966
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10001077 [exp]	8.4	0.7651
AT1G32928			unknown protein		Lus10033221 [exp]	8.5	0.8447
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	8.9	0.8143
AT1G18970		GLP4	germin-like protein 4 (.1)		Lus10043393 [exp]	9.7	0.8759

Compare expression of checked genes

Lus10040924 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.