Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20650 113 / 8e-33 COPT5 copper transporter 5 (.1) AT2G26975 54 / 9e-10 Ctr copper transporter family (.1) AT5G59040 47 / 3e-07 COPT3 copper transporter 3 (.1) AT3G46900 44 / 4e-06 COPT2 copper transporter 2 (.1) AT5G59030 42 / 3e-05 COPT1 copper transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009819 [exp] 237 / 1e-81 AT5G20650 147 / 5e-46 copper transporter 5 (.1) Lus10007092 [exp] 122 / 3e-36 AT5G20650 169 / 6e-55 copper transporter 5 (.1) Lus10012501 [exp] 119 / 5e-35 AT5G20650 177 / 5e-58 copper transporter 5 (.1) Lus10022671 [exp] 115 / 2e-33 AT5G20650 176 / 2e-57 copper transporter 5 (.1) Lus10040726 [exp] 55 / 7e-10 AT2G26975 138 / 2e-42 Ctr copper transporter family (.1) Lus10016463 [exp] 50 / 2e-08 AT2G26975 92 / 5e-25 Ctr copper transporter family (.1) Lus10016464 [exp] 46 / 1e-06 AT5G59030 151 / 1e-47 copper transporter 1 (.1) Lus10021107 [exp] 42 / 2e-05 AT5G59040 87 / 1e-22 copper transporter 3 (.1) Lus10017205 [exp] 42 / 3e-05 AT2G26975 87 / 2e-22 Ctr copper transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219200 [exp] 160 / 3e-51 AT5G20650 140 / 1e-43 copper transporter 5 (.1) Potri.006G140700 [exp] 135 / 1e-41 AT5G20650 151 / 7e-48 copper transporter 5 (.1) Potri.009G038700 [exp] 51 / 1e-08 AT2G26975 133 / 2e-40 Ctr copper transporter family (.1) Potri.006G093200 [exp] 47 / 2e-07 AT3G46900 89 / 6e-23 copper transporter 2 (.1) Potri.006G093300 [exp] 44 / 4e-06 AT2G37925 114 / 3e-33 copper transporter 4 (.1) Potri.001G246000 [exp] 38 / 0.0006 AT5G59030 134 / 9e-41 copper transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04145 [flax] [poplar] Ctr Ctr copper transporter family
Representative CDS sequence Show only first row Show all	>Lus10040925 pacid=23179644 polypeptide=Lus10040925 locus=Lus10040925.g ID=Lus10040925.BGIv1.0 annot-version=v1.0 ATGATGCACATGACCTTCTACTGGGGCCGTGAGGTAACCATCCTCTTCGATTCATGGCACACCAAATCCTGGATCGGCTACTCCCTCTCCCTCGTCGTCT GCCTTCTGACCGCCGCTCTCTACCAGTACCTCGAGAACCACCGCATGCGCCTCAAGATCTCCGCCACCTCCGCCGCCGATCTCACCACTCCCGATGCGCA AGTGCCGTTGATCCAGAGGAAGTTGGGCGGCGGCGCCGGCAGTAGTAACGCGAGAGTCGGTGGAGCCGCGCTGTTCGGGTTGAATTCGGCGATCGGGTAC ATGCTGATGCTGGCGGTTATGTCGTTCAACGGCGGCGTGTTTGTGGCGGTTGTTGTTGGGCTTGGATTGGGGTACTTGCTGTTTAGGAGCGGGTTTGATG AGAATATGCTTATCCAGGACGAATCTTGCGCTTGTGCCTGA
AA sequence Show only first row Show all	>Lus10040925 pacid=23179644 polypeptide=Lus10040925 locus=Lus10040925.g ID=Lus10040925.BGIv1.0 annot-version=v1.0 MMHMTFYWGREVTILFDSWHTKSWIGYSLSLVVCLLTAALYQYLENHRMRLKISATSAADLTTPDAQVPLIQRKLGGGAGSSNARVGGAALFGLNSAIGY MLMLAVMSFNGGVFVAVVVGLGLGYLLFRSGFDENMLIQDESCACA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10040925 [exp]	0	1
AT5G20650		COPT5	copper transporter 5 (.1)		Lus10009819 [exp]	1.0	0.9677
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Lus10008836 [exp]	4.2	0.8947
AT3G52060			Core-2/I-branching beta-1,6-N-...		Lus10028866 [exp]	5.3	0.9032
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Lus10041653 [exp]	6.5	0.9159
AT3G60520			unknown protein		Lus10028179 [exp]	7.1	0.8766
AT1G47410			unknown protein		Lus10009767 [exp]	7.7	0.9145
AT3G61180			RING/U-box superfamily protein...		Lus10036569 [exp]	7.7	0.8244
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Lus10017947 [exp]	8.1	0.8983
AT5G47635			Pollen Ole e 1 allergen and ex...		Lus10039078 [exp]	11.8	0.8870
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10043444 [exp]	11.8	0.8624

Compare expression of checked genes

Lus10040925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.