Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47710 104 / 4e-26 Serine protease inhibitor (SERPIN) family protein (.1) AT2G25240 103 / 7e-26 Serine protease inhibitor (SERPIN) family protein (.1) AT3G45220 102 / 3e-25 Serine protease inhibitor (SERPIN) family protein (.1) AT1G64030 94 / 4e-22 ATSRP3 serpin 3 (.1) AT2G26390 90 / 7e-21 Serine protease inhibitor (SERPIN) family protein (.1) AT2G35580 89 / 2e-20 Serine protease inhibitor (SERPIN) family protein (.1) AT1G62170 88 / 4e-20 Serine protease inhibitor (SERPIN) family protein (.1), Serine protease inhibitor (SERPIN) family protein (.2) AT2G14540 77 / 2e-16 ATSRP2 serpin 2 (.1) AT1G63280 62 / 2e-12 Serine protease inhibitor (SERPIN) family protein (.1) AT1G51330 56 / 1e-09 Serine protease inhibitor (SERPIN) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019009 [exp] 280 / 1e-93 AT1G47710 209 / 9e-64 Serine protease inhibitor (SERPIN) family protein (.1) Lus10032600 [exp] 179 / 8e-56 AT1G47710 99 / 6e-24 Serine protease inhibitor (SERPIN) family protein (.1) Lus10009905 [exp] 153 / 2e-47 AT2G14540 72 / 1e-15 serpin 2 (.1) Lus10032754 [exp] 120 / 5e-32 AT1G47710 487 / 1e-172 Serine protease inhibitor (SERPIN) family protein (.1) Lus10002792 [exp] 118 / 4e-31 AT1G47710 495 / 6e-176 Serine protease inhibitor (SERPIN) family protein (.1) Lus10039336 [exp] 109 / 3e-28 AT2G26390 105 / 2e-25 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034364 [exp] 109 / 1e-27 AT1G47710 296 / 4e-97 Serine protease inhibitor (SERPIN) family protein (.1) Lus10034362 [exp] 102 / 1e-25 AT1G47710 274 / 1e-89 Serine protease inhibitor (SERPIN) family protein (.1) Lus10005089 [exp] 96 / 1e-22 AT1G47710 306 / 2e-101 Serine protease inhibitor (SERPIN) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G100900 [exp] 110 / 5e-28 AT1G47710 337 / 2e-113 Serine protease inhibitor (SERPIN) family protein (.1) Potri.014G036000 [exp] 104 / 6e-26 AT1G47710 476 / 1e-168 Serine protease inhibitor (SERPIN) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00079 [flax] [poplar] Serpin Serpin (serine protease inhibitor)
Representative CDS sequence Show only first row Show all	>Lus10040926 pacid=23179874 polypeptide=Lus10040926 locus=Lus10040926.g ID=Lus10040926.BGIv1.0 annot-version=v1.0 ATGGCAGCCTTGCGCCTAGCCGCTCCGTCGAAAAGCGAGCAGGCGGCAACCGTGTCTCACGCCAACGCGGTTTGGGTGGATCGGAAATTCTCGTTGAGCA AATCATTCAAGAAGGTGGTTACTGAAGTATACCATGCCGATACCGACGACACTGCCGATTTTGCATCCCAGCCTGAAAAAGCAGTCAAGGAAATTAACGC ATGGGTGGAGAAATCAACCAAAGGATGCATCGGTAACCTCGTCAGCTCTCAAGACATAAACTCTACAACAGTGTTAATCCTGGCCAACGCACTCTACTTC AAAGGTTGCTTCCCAGACTACCTCTTCTCTTCCTCTAACACATCAGATGATACATTCCGCTGCCTCAACAAAACTGATAAAGTCACCGTCCCCTTCATGA ACAACTCCAGAGTCGACCTACATTTCGCCAGCTTTGATGATTTTAAGGTCCTCGAGCTTCCCTATGAATCGTCAAATTTCCGAGCCGATAAAAAGTGCCC CCGATTCTCCATGTACATCCTTCCCCGGAACCGAAACGGGCTTCCTCAAATGCTACGCAAGTATTTTGGCAGCTCGAATCCTGGTCAGGAAATTTTACAA ACACTTGGCAAACACAAGAAGCAGTTGCTCGGAAAAGTGCGTATTCCCAAGTGGAAATTCTCCCTCAGGTGCCATCTTAAGAAGACAAGGGCTCATGTTG CTGTTTGA
AA sequence Show only first row Show all	>Lus10040926 pacid=23179874 polypeptide=Lus10040926 locus=Lus10040926.g ID=Lus10040926.BGIv1.0 annot-version=v1.0 MAALRLAAPSKSEQAATVSHANAVWVDRKFSLSKSFKKVVTEVYHADTDDTADFASQPEKAVKEINAWVEKSTKGCIGNLVSSQDINSTTVLILANALYF KGCFPDYLFSSSNTSDDTFRCLNKTDKVTVPFMNNSRVDLHFASFDDFKVLELPYESSNFRADKKCPRFSMYILPRNRNGLPQMLRKYFGSSNPGQEILQ TLGKHKKQLLGKVRIPKWKFSLRCHLKKTRAHVAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G47710			Serine protease inhibitor (SER...		Lus10040926 [exp]	0	1
					Lus10032002 [exp]	1.4	0.9301
AT1G52540			Protein kinase superfamily pro...		Lus10001323 [exp]	2.0	0.9221
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10042336 [exp]	6.9	0.9219
					Lus10001186 [exp]	8.0	0.9166
					Lus10000984 [exp]	8.9	0.9135
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	9.8	0.9135
AT5G20260			Exostosin family protein (.1)		Lus10027707 [exp]	9.8	0.7011
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	10.6	0.9135
					Lus10017835 [exp]	11.3	0.9135
AT3G20190			Leucine-rich repeat protein ki...		Lus10034795 [exp]	11.6	0.6625

Compare expression of checked genes

Lus10040926 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.