Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00550 703 / 0 DGD2 digalactosyl diacylglycerol deficient 2 (.1) AT3G11670 510 / 1e-174 DGD1 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009820 [exp] 696 / 0 AT4G00550 552 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Lus10021273 [exp] 512 / 1e-175 AT3G11670 1127 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10004200 [exp] 509 / 5e-173 AT3G11670 984 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029403 [exp] 365 / 7e-121 AT3G11670 803 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10013576 [exp] 321 / 2e-101 AT3G11670 546 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10029404 [exp] 145 / 5e-41 AT3G11670 298 / 7e-97 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Lus10033686 [exp] 125 / 5e-34 AT3G11670 181 / 8e-54 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G079400 [exp] 723 / 0 AT4G00550 717 / 0.0 digalactosyl diacylglycerol deficient 2 (.1) Potri.016G070200 [exp] 528 / 0 AT3G11670 1118 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2) Potri.006G203200 [exp] 527 / 0 AT3G11670 1117 / 0.0 DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1, UDP-Glycosyltransferase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1
Representative CDS sequence Show only first row Show all	>Lus10040927 pacid=23179795 polypeptide=Lus10040927 locus=Lus10040927.g ID=Lus10040927.BGIv1.0 annot-version=v1.0 ATGACTGGAACCGCCGTGAATCCTCTGTTTCGTGCTGTGTATCTTGCCAAGGATGGAGTTAGAGATGTCACTTTGGTGATTCCATGGCTGTCATTGAAGC ATCAAAAACTGGTTTATCCAAATAATGTCACCTTCGGTTCTCCTTCGGAGCAAGAAGCTTATGTTCGCCGGTGGCTGGAGGAGAGAATTTCATTTTCTGC TGATTTCTCCATCAGATTCTATCCTGGGAAGTTTGCTCTAGATAAGCGAAGTATCCTTCCAGTTGGAGATATTTCAGATGCTATTCCAGATGAAGAGGCT GATGTTGCTGTCCTGGAGGAGCCTGAGCACCTTACATGGTTTCACCATGGAAAGAGATGGAAAATCAAGTTCCGCTTTGTGGTTGGAGTAGTGCACACCA ATTATTTGGAGTACGTGAAGAGGGAGAGTAATGGCCGAGTCAAAGCCTTGATTCTTAGATATCTCAACACTTGGGTTGTTGAAATCTATTGCCACAAGGT GATCCGGTTGTCCGCTGCCACCCAGGACTATCCTAATTCCATCATTTGCAATGTCCATGGTGTAAACCCCAAGTTCCTTGAAATAGGAAAGAAAACAATA GAGCTGCAGCAATCTGGTAAGAAGGCGTTCAGTAAAGGTGCTTACTACATAGGTAAAATGGTATGGAGCAAAGGGTACAAAGAGCTTCTTGAACTCCTTC AGAGTCACCAAAAGGAGCTAGCTGGGCTGGAAGTAGATTTATATGGCAGCGGGGAAGACTCAAATGAAGTCCAGGAAGCATTTAAAAAGTTGGAACTAGT TGTTAGAGTACACCCTGGCCGTGATCATGCCGACCCTGTATTCCACGATTACAAACTGTTCCTGAACCCGAGCACTACCGACGTGGTTTGCACAACAACA GCCGAAGCTCTAGCAATGGGGAAAACAGTTGTTTGCGCCAACCACACATCAAATGACTTCTTCAAGCAGTTCCCTAACTGCCGGACTTACGACGACAGCC ACGGATTCGTAGAGGCCACCAACACTGCCTTGAAGGGAGAGCCTGCCGAACTCACAGATGCCCACAGGCACGAACTCTCGTGGGAGGCAGCCACGGAACG GTTTCTGAAAGTAAGCAATCTTCAGCAGGCCGAGGAAGGAACTTCTTCAAAGAAACTGTCGAAACGTCCTTCGAAGCTCTTCGCATCAACCTCCATCAAC TTGCGGAAGAACATCGAGGAAGCATCGGCATACATGCACTTCGTTGCTTCTGGGTTCGAGACGTCGAGGAGAGCTTTCGGTGCCATTCCGGGGACCCTGC AGCCAGACGAAGAACAATCTAAAGAGCTGGGCCTGCAGACTCCTCCCAAGACGCGGAGCTCCAGCACGAAGAAGAGCTCGAGCTTTTGA
AA sequence Show only first row Show all	>Lus10040927 pacid=23179795 polypeptide=Lus10040927 locus=Lus10040927.g ID=Lus10040927.BGIv1.0 annot-version=v1.0 MTGTAVNPLFRAVYLAKDGVRDVTLVIPWLSLKHQKLVYPNNVTFGSPSEQEAYVRRWLEERISFSADFSIRFYPGKFALDKRSILPVGDISDAIPDEEA DVAVLEEPEHLTWFHHGKRWKIKFRFVVGVVHTNYLEYVKRESNGRVKALILRYLNTWVVEIYCHKVIRLSAATQDYPNSIICNVHGVNPKFLEIGKKTI ELQQSGKKAFSKGAYYIGKMVWSKGYKELLELLQSHQKELAGLEVDLYGSGEDSNEVQEAFKKLELVVRVHPGRDHADPVFHDYKLFLNPSTTDVVCTTT AEALAMGKTVVCANHTSNDFFKQFPNCRTYDDSHGFVEATNTALKGEPAELTDAHRHELSWEAATERFLKVSNLQQAEEGTSSKKLSKRPSKLFASTSIN LRKNIEEASAYMHFVASGFETSRRAFGAIPGTLQPDEEQSKELGLQTPPKTRSSSTKKSSSF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10040927 [exp]	0	1
AT5G65200		ATPUB38	ARABIDOPSIS THALIANA PLANT U-B...		Lus10043464 [exp]	1.4	0.8297
AT1G80230			Rubredoxin-like superfamily pr...		Lus10035917 [exp]	1.7	0.8261
AT5G38060			unknown protein		Lus10004070 [exp]	4.8	0.8361
AT4G17960			unknown protein		Lus10030960 [exp]	5.3	0.8159
AT4G38670			Pathogenesis-related thaumatin...		Lus10041108 [exp]	7.3	0.7312
AT3G10300			Calcium-binding EF-hand family...		Lus10018041 [exp]	9.9	0.8048
AT4G20740		EMB3131	EMBRYO DEFECTIVE 3131, Pentatr...		Lus10016361 [exp]	12.3	0.7419
AT2G29700		ATPH1	pleckstrin homologue 1 (.1)		Lus10040681 [exp]	12.3	0.7952
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10038734 [exp]	16.2	0.7928
AT1G28200		FIP1	FH interacting protein 1 (.1)		Lus10040539 [exp]	18.4	0.8094

Compare expression of checked genes

Lus10040927 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.