Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00560 271 / 5e-92 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009821 [exp] 429 / 3e-153 AT4G00560 417 / 3e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G079700 [exp] 291 / 8e-99 AT4G00560 436 / 1e-154 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3), NAD(P)-binding Rossmann-fold superfamily protein (.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF04321 [flax] [poplar] RmlD_sub_bind RmlD substrate binding domain
Representative CDS sequence Show only first row Show all	>Lus10040928 pacid=23179910 polypeptide=Lus10040928 locus=Lus10040928.g ID=Lus10040928.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAGAAGACGACGATGAAAGTGCTGGTGGTCGGTGGTACAGGCTACTTAGGCCAACACTTACTGGAAGCGCTGTCGAAGATCGGCGGCGACG AGGCCGTCCCCTACGATGTAGCATTCACATACCACTCCGACCCCAGCCCTCCCCAGGCGCTGCTCGCCGCCGTGCCTCACTGTCTCTCCTTCCGCGTCGA TCTGCGGGCCGGAGACGGATTCGACGCTGTTTCCCGGCGATTCGGCCAGGATCCCGATGCGGCAATGGCTATCAACGTTCCTTCCGCTCTGGTTAATTGG CTAGATAAGGATGCTTTCCTCATCCATTTATCCACAGATCAAGTTTATGAAGGGGTGAAACCTTTCTACAAGGAGGAAGAAGATGAACCTGCTGCAGTGA ATATTTACGGCAAATCCAAAATGGCAGCTGAGAAGTTCATATCTGAGAAATGCTCGAATTTCGCAATTCTGAGGAGCAGCATTATCTATGGCCCTCAGAC TGTTTCCCCTGTTCCCAAGTCTCTTCCAGTTCAGTGGATGGATGGAGTTCTTTCAAAGGGAGAGCCAGTGGAGTTCTTTCATGATGAGTTTCGGTGCCCA GTATATGTGAAGGATATTGTTAACCTTATCTTGGCCTTGATGAACAAGAAGGTATCAGGTAAATCAACAGCTGAACCTTGCATATTGCTTGCAACTGAGA TCGAGTCATTTAGAAAGAACTCATTCTACTATGTCTGCAGAAGGTAA
AA sequence Show only first row Show all	>Lus10040928 pacid=23179910 polypeptide=Lus10040928 locus=Lus10040928.g ID=Lus10040928.BGIv1.0 annot-version=v1.0 MAAEKTTMKVLVVGGTGYLGQHLLEALSKIGGDEAVPYDVAFTYHSDPSPPQALLAAVPHCLSFRVDLRAGDGFDAVSRRFGQDPDAAMAINVPSALVNW LDKDAFLIHLSTDQVYEGVKPFYKEEEDEPAAVNIYGKSKMAAEKFISEKCSNFAILRSSIIYGPQTVSPVPKSLPVQWMDGVLSKGEPVEFFHDEFRCP VYVKDIVNLILALMNKKVSGKSTAEPCILLATEIESFRKNSFYYVCRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00560			NAD(P)-binding Rossmann-fold s...		Lus10040928 [exp]	0	1
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10036747 [exp]	2.0	0.8857
AT3G16000		MFP1	MAR binding filament-like prot...		Lus10025769 [exp]	3.5	0.8904
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	4.5	0.8885
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Lus10009426 [exp]	11.1	0.8882
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Lus10042854 [exp]	12.0	0.8821
AT1G13040			Pentatricopeptide repeat (PPR-...		Lus10011646 [exp]	16.7	0.8633
AT1G80420		ATXRCC1	BRCT domain-containing DNA rep...		Lus10025764 [exp]	18.4	0.8274
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Lus10009311 [exp]	19.3	0.8483
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Lus10003599 [exp]	20.4	0.8745
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Lus10013178 [exp]	20.5	0.8791

Compare expression of checked genes

Lus10040928 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.