Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00570 931 / 0 NAD-ME2 NAD-dependent malic enzyme 2 (.1) AT2G13560 737 / 0 NAD-ME1 NAD-dependent malic enzyme 1 (.1) AT5G25880 374 / 3e-122 ATNADP-ME3 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) AT2G19900 362 / 3e-117 ATNADP-ME1 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) AT5G11670 355 / 1e-114 ATNADP-ME2 Arabidopsis thaliana NADP-malic enzyme 2, NADP-malic enzyme 2 (.1) AT1G79750 351 / 2e-112 ATNADP-ME4 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009822 [exp] 1140 / 0 AT4G00570 1028 / 0.0 NAD-dependent malic enzyme 2 (.1) Lus10018939 [exp] 754 / 0 AT2G13560 1081 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10028642 [exp] 754 / 0 AT2G13560 1075 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10011772 [exp] 619 / 0 AT2G13560 827 / 0.0 NAD-dependent malic enzyme 1 (.1) Lus10043025 [exp] 382 / 1e-124 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10012964 [exp] 362 / 5e-118 AT2G19900 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 1, NADP-malic enzyme 1 (.1) Lus10025823 [exp] 354 / 3e-113 AT1G79750 1019 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Lus10011125 [exp] 341 / 1e-109 AT5G25880 917 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Lus10005484 [exp] 319 / 2e-101 AT5G25880 886 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G156000 [exp] 983 / 0 AT4G00570 903 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G079900 [exp] 962 / 0 AT4G00570 904 / 0.0 NAD-dependent malic enzyme 2 (.1) Potri.014G043700 [exp] 763 / 0 AT2G13560 982 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.002G135300 [exp] 762 / 0 AT2G13560 1007 / 0.0 NAD-dependent malic enzyme 1 (.1) Potri.018G046600 [exp] 372 / 2e-121 AT5G25880 926 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.006G236500 [exp] 370 / 3e-120 AT5G25880 945 / 0.0 Arabidopsis thaliana NADP-malic enzyme 3, NADP-malic enzyme 3 (.1) Potri.018G086700 [exp] 364 / 4e-118 AT1G79750 957 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.003G049300 [exp] 350 / 6e-112 AT1G79750 932 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1) Potri.001G189700 [exp] 348 / 3e-111 AT1G79750 950 / 0.0 Arabidopsis thaliana NADP-malic enzyme 4, NADP-malic enzyme 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0603 [flax] [poplar] AA_dh_N PF00390 [flax] [poplar] malic Malic enzyme, N-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF03949 [flax] [poplar] Malic_M Malic enzyme, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10040930 pacid=23179710 polypeptide=Lus10040930 locus=Lus10040930.g ID=Lus10040930.BGIv1.0 annot-version=v1.0 ATGTGGAAGCTCGCGCGGCTCGTTGTGGCTTCGAGGAATTTTCGGAGGACGCGGCCTTTCTCCACTGCTATACCTTTGCCCTGTATCGTCCACAAGCGCG GTGCCGACATCCTTCATGATCCTTGGTTCAACAAGGATACTGGGTTTCCTTTAACTGAAAGGGACCGTTTGGGTCTTCGTGGTCTCCTTCCTCCTCGCGT TATATCATTCGAGCAGCAATATGCGCGCTTCATGGAGTCATATCGATCCCTTGAGAGGAATACCGTGGGCCAACCAGAAGGTGTTGTATCGTTAGCAAAA TGGAGGATCTTGAACAGACTTCACGATAGGAATGAGACATTGTACTACCGGGTTCTTATTGATAACATCAAGGATTTCGCTCCGGTGATATACACACCAA CGGTGGGCTTAGTCTGTCAAAACTATTCCGGGTTATTTAGGCGTCCACGTGGAATGTACTTCAGTGCAAAGGACAAAGGAGAGATGATGTCAATGATCTA CAACTGGCCAGCTCATCAGGTAGACATGATAGTCATCACAGATGGTAGTCGTATTCTTGGGCTAGGTGACCTTGGTGTTCAAGGAATAGGCATTCCAATT GGGAAACTTGACATGTATGTTGCTGCTGCTGGCATCAACCCACAAAGAGTACTCCCAGTTATGCTTGATGTGGGTACCAATAACCAAAAGCTACTGGAAG ATCCTCTCTATTTGGGACTCAGACAACCTAGGCTGGAAGGTGAAGAATATTTGACAATTGTTGATGAGTTCATGGAAGCTGTTCACACTCGTTGGCCGAA GGCAATTGTCCAGTTTGAAGATTTTCAAGCAAAATGGGCATTTGAAACACTGGAAAGATATCGTGGAAGATTTTGCATGTTCAATGATGATGTCCAGGGG ACTGCTGGTGTGGCACTTGCAGGATTGCTTGGATCAGTAAGGGCACAAGGTCGACCATTATCTGACTTTTCGAAACAAAAGATTGTTGTAGTGGGAGCAG GAAGTGCGGGGCTAGGTGTCCTGAAGATGGCTGTACAGGCCGTTTCTAGAATGTCTGGGAACGGTGAAACATCAGCTGCTAAACAGTTTTATGTGCTTGA TAAAGATGGCCTTATTACTCAAGACCGAAAAAATCTTGATCCAGGAGCAGCACCTTTTGCGCAAGACTTGAAAAATGTTGAGGGCCTTAGAGAAGGCTGT AGTCTGGTTGAAGTGGTCAAAACACTCAAGCCTCACGTGCTTCTTGGTTTATCTGGAGTAGGTGGAATCTTCACCGAGGAGGTCCTGAAGGCCATGAGAG GTTCTGATTCTCCCAGACCTGCAATTTTCGCCATGTCTAACCCCACCATGAACGGTAGGTTGGCAAGCTCCATATTTCCATACATCCCAGGAGATCTCAC TCATTTCTTCTGTAGTTGGAAATCTTACTCGATATTCTCTTCAACAGCTGAGTGTACCGCTGCTGATGCTTTCAAGCATGCTGGAGATAACATAGTTTTT GCAAGTGGAAGTCCATTTGAAAATGTTGACCTTGGAAATGGCAAAGTTGGGCATGTGAATCAGGCAAATAACATGTACCTATTTCCCGGAGTTGGCCTGG GAGCACTTCTATCAGGAGCACGTCTTATTACAGATGGCATGTTGCAAGCTGCTGCGGAATGTTTGGCTTCGTACATTACTGAAGATGAGATCCAAAAAGG CATACTGTACCCATCAATCAACAGCATTCGAGACATCACGGCTGAGGTCGGCGCTGCAGTTCTTCGATCAGCAGTCTCCGAGAGGCTGGCAGAGGGACAC GGTGAGGTGGGGCACAAGGAGCTGAAGCAGATGTCAAAGGATGAGACGGTGGAGTACATAACACGCAACATGTGGTACCCGATTTACAGTCCTCTTGTTC ATGAGAAGTAA
AA sequence Show only first row Show all	>Lus10040930 pacid=23179710 polypeptide=Lus10040930 locus=Lus10040930.g ID=Lus10040930.BGIv1.0 annot-version=v1.0 MWKLARLVVASRNFRRTRPFSTAIPLPCIVHKRGADILHDPWFNKDTGFPLTERDRLGLRGLLPPRVISFEQQYARFMESYRSLERNTVGQPEGVVSLAK WRILNRLHDRNETLYYRVLIDNIKDFAPVIYTPTVGLVCQNYSGLFRRPRGMYFSAKDKGEMMSMIYNWPAHQVDMIVITDGSRILGLGDLGVQGIGIPI GKLDMYVAAAGINPQRVLPVMLDVGTNNQKLLEDPLYLGLRQPRLEGEEYLTIVDEFMEAVHTRWPKAIVQFEDFQAKWAFETLERYRGRFCMFNDDVQG TAGVALAGLLGSVRAQGRPLSDFSKQKIVVVGAGSAGLGVLKMAVQAVSRMSGNGETSAAKQFYVLDKDGLITQDRKNLDPGAAPFAQDLKNVEGLREGC SLVEVVKTLKPHVLLGLSGVGGIFTEEVLKAMRGSDSPRPAIFAMSNPTMNGRLASSIFPYIPGDLTHFFCSWKSYSIFSSTAECTAADAFKHAGDNIVF ASGSPFENVDLGNGKVGHVNQANNMYLFPGVGLGALLSGARLITDGMLQAAAECLASYITEDEIQKGILYPSINSIRDITAEVGAAVLRSAVSERLAEGH GEVGHKELKQMSKDETVEYITRNMWYPIYSPLVHEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Lus10040930 [exp]	0	1
AT3G02580		BUL1, DWF7, STE...	DWARF 7, BOULE 1, sterol 1 (.1...		Lus10028498 [exp]	2.8	0.8558
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10026774 [exp]	3.3	0.8642
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10040358 [exp]	6.9	0.8178
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10016952 [exp]	11.4	0.8210
AT4G01660		ATABC1, ATATH10...	ABC transporter 1 (.1)		Lus10038017 [exp]	13.5	0.8196
AT3G62660		GATL7	galacturonosyltransferase-like...		Lus10000262 [exp]	13.7	0.8169
AT2G05920			Subtilase family protein (.1)		Lus10034900 [exp]	15.7	0.8291
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10012264 [exp]	17.5	0.8030
AT4G04910		NSF	N-ethylmaleimide sensitive fac...		Lus10011177 [exp]	18.2	0.8295
AT1G01300			Eukaryotic aspartyl protease f...		Lus10030246 [exp]	21.1	0.8145

Compare expression of checked genes

Lus10040930 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.