Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55010 527 / 0 EMB2818, ATPURM, PUR5 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009823 [exp] 663 / 0 AT3G55010 522 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Lus10024142 [exp] 545 / 0 AT3G55010 439 / 3e-151 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Lus10039497 [exp] 538 / 0 AT3G55010 489 / 4e-175 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198600 [exp] 577 / 0 AT3G55010 526 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) Potri.014G123000 [exp] 564 / 0 AT3G55010 520 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02769 [flax] [poplar] AIRS_C AIR synthase related protein, C-terminal domain PF00586 [flax] [poplar] AIRS AIR synthase related protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040931 pacid=23179742 polypeptide=Lus10040931 locus=Lus10040931.g ID=Lus10040931.BGIv1.0 annot-version=v1.0 ATGACTTCAGCCAATGCAGAGTTAACCCGGGCTGTTGGAGCATCTATTAGACCGTTCTCGACCAAACTTACTCATCGGACCATGGATATGTGTGTGTTTA ACCGTTCCTTCACTGGAAGATCGCTCTCCGTTGCTGCATCTGTAGCTAAAAGCGGACTTAATGGAATCAGGGATGGGTCTGGTCAACTTACATATAAAGA TGCTGGTGTAGACATTGATGCTGGGTCCGAACTTGTCAAGAGGATTGCAAAGATGGCTCCTGGAATTGGAGGTTTTGGCGGCCTTTTCCCCCTTGGGGAT TCATACCTAGTTGCTGGCACAGATGGTGTTGGTACCAAACTGAAACTTGCGTTCCAGACAGGAATCCATGATACTATTGGGGTTGATTTGGTTGCGATGA GTGTCAACGACATAGTCACTTCAGGTGCAAAGCCGCTCTTCTTTCTTGATTACTTTGCAACTAGCCGCCTTGATGTTGACCTGGCCGAAAAGGTTATAAG AGGCATTGTAGATGGCTGCCAACAATCTGATTGCGCACTTTTGGGAGGAGAGACTGCAGAGATGCCAGATTTCTATGCGGAGGGTGAATATGACCTCAGC GGGTTTGCAGTTGGCATTGTGAAAAAGGACTCGGTTATCAATGGGAAAAACATCGTAGCAGGGGATGTTTTGATTGGGTTACCATCCAGCGGAGTTCATT CCAATGGTTTTTCTCTTGTGAGAAGGGTTTTGGCCAAGAGTGGTGTTTCTCTCAAGGACCAGCTTCCTGGAAACAACCTCACATTAGGAGAGGCTCTCAT TGCACCTACAGTTATATATGCGAACCAGGTGCTTGACATAATCAGCAAGGGAGGAGTAAAGGGGATAGCCCACATCACAGGAGGTGGATTTACAGATAAC ATACCCAGAGTATTCCCGAAGGGACTTGGAGCTACTATTTACAACAACTCCTGGGATATTCTGCCCGTCTTTAAATGGATCCAAGAGGCGGGAAACATAG AGGATTCAGAGATGAGAAGGACCTTCAACATGGGGATTGGGATGGTTCTGGTGATGACAAAGGAAGCAGGTAGAAGAATATTGGAGGAGAGGCAACACAA GGCGTATCATATCGGGGAGGTTGTTGATGGCGAAGGAGTGAGCTATCTATAA
AA sequence Show only first row Show all	>Lus10040931 pacid=23179742 polypeptide=Lus10040931 locus=Lus10040931.g ID=Lus10040931.BGIv1.0 annot-version=v1.0 MTSANAELTRAVGASIRPFSTKLTHRTMDMCVFNRSFTGRSLSVAASVAKSGLNGIRDGSGQLTYKDAGVDIDAGSELVKRIAKMAPGIGGFGGLFPLGD SYLVAGTDGVGTKLKLAFQTGIHDTIGVDLVAMSVNDIVTSGAKPLFFLDYFATSRLDVDLAEKVIRGIVDGCQQSDCALLGGETAEMPDFYAEGEYDLS GFAVGIVKKDSVINGKNIVAGDVLIGLPSSGVHSNGFSLVRRVLAKSGVSLKDQLPGNNLTLGEALIAPTVIYANQVLDIISKGGVKGIAHITGGGFTDN IPRVFPKGLGATIYNNSWDILPVFKWIQEAGNIEDSEMRRTFNMGIGMVLVMTKEAGRRILEERQHKAYHIGEVVDGEGVSYL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10040931 [exp]	0	1
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	1.7	0.8890
AT3G57050		CBL	cystathionine beta-lyase (.1.2...		Lus10027313 [exp]	4.2	0.8321
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010745 [exp]	4.9	0.8613
AT1G19100			Histidine kinase-, DNA gyrase ...		Lus10042100 [exp]	6.0	0.8518
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	8.0	0.8412
AT3G61620		RRP41	3'-5'-exoribonuclease family p...		Lus10000255 [exp]	8.8	0.8285
AT2G45730			eukaryotic initiation factor 3...		Lus10033150 [exp]	9.5	0.7993
AT1G12410		EMB3146, CLP2, ...	NUCLEAR-ENCODED CLP PROTEASE P...		Lus10028905 [exp]	17.5	0.8162
AT1G20370			Pseudouridine synthase family ...		Lus10005641 [exp]	18.2	0.8253
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Lus10006914 [exp]	19.2	0.8281

Compare expression of checked genes

Lus10040931 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.