Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45790 432 / 1e-155 ATPMM phosphomannomutase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009825 [exp] 508 / 0 AT2G45790 431 / 2e-155 phosphomannomutase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G080500 [exp] 466 / 4e-169 AT2G45790 445 / 8e-161 phosphomannomutase (.1) Potri.014G080300 [exp] 458 / 6e-166 AT2G45790 429 / 1e-154 phosphomannomutase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03332 [flax] [poplar] PMM Eukaryotic phosphomannomutase
Representative CDS sequence Show only first row Show all	>Lus10040934 pacid=23179829 polypeptide=Lus10040934 locus=Lus10040934.g ID=Lus10040934.BGIv1.0 annot-version=v1.0 ATGGCAGCAAGGAAGCCAGGGCTGATTGCTCTGTTCGACGTCGACGGGACTCTTACAGCTCCAAGAAAGGGTGTCACCCCAAAGATGTTCGAGTTTATGC AGCAACTTCGGAAGGTGGTTACAGTGGGAGTGGTTGGTGGTTCCGATCTCTCTAAGATATCAGAGCAGCTTGGGAAGACAGTCATCACCGATTATGATTA TTGTTTTTCCGAGAATGGTCTTGTAGCTCATAAAGCTGGCAGTCTTATTGGCACCCAGAGCTTGAAGACTTATCTTGGAGATGAACAGCTTAAGGAATTT ATCAACTTCACACTGCATTATATTGCTGACTTGGATATCCCAATAAAAAGAGGAACTTTCATAGAATTCAGAAGTGGTATGCTGAATGTATCTCCAATTG GGAGGAACTGCAGCCAAGAGGAAAGGGATGATTTTGAAAAATATGACAAGGTTCATAATATACGCCCAAAGATGGTGGCTCTGCTACGTGAGAAATTTGC ACACCTTAATCTGACATTTTCTATAGGTGGACAGATAAGCTTTGATGTTTTCCCCCAGGGATGGGACAAGACATACTGCTTGCGATATCTCGATGAGTTC ACTGAAATCCACTTCTTCGGTGACAAAACTTACAAGGGAGGAAATGATCATGAGATATATGAATCAGAAAGGACCGTGGGACATACAGTGACAAGCCCTG ATGATACGATGGAGAAATGCAGAGCTTTGTTCCTCTGA
AA sequence Show only first row Show all	>Lus10040934 pacid=23179829 polypeptide=Lus10040934 locus=Lus10040934.g ID=Lus10040934.BGIv1.0 annot-version=v1.0 MAARKPGLIALFDVDGTLTAPRKGVTPKMFEFMQQLRKVVTVGVVGGSDLSKISEQLGKTVITDYDYCFSENGLVAHKAGSLIGTQSLKTYLGDEQLKEF INFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEERDDFEKYDKVHNIRPKMVALLREKFAHLNLTFSIGGQISFDVFPQGWDKTYCLRYLDEF TEIHFFGDKTYKGGNDHEIYESERTVGHTVTSPDDTMEKCRALFL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10040934 [exp]	0	1
AT2G45790		ATPMM	phosphomannomutase (.1)		Lus10009825 [exp]	1.0	0.9137
AT1G51540			Galactose oxidase/kelch repeat...		Lus10033376 [exp]	6.3	0.7959
AT2G29390		ATSMO2-2, SMO2-...	Arabidopsis thaliana sterol 4-...		Lus10040739 [exp]	10.4	0.8210
AT5G61240			Leucine-rich repeat (LRR) fami...		Lus10004662 [exp]	11.5	0.7908
AT1G19440		KCS4	3-ketoacyl-CoA synthase 4 (.1)		Lus10026345 [exp]	13.4	0.8178
AT1G79760		DTA4	downstream target of AGL15-4 (...		Lus10025825 [exp]	14.1	0.7581
AT5G62690		TUB2	tubulin beta chain 2 (.1)		Lus10035497 [exp]	14.4	0.8060
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Lus10043462 [exp]	16.6	0.8126
AT3G66654			Cyclophilin-like peptidyl-prol...		Lus10012005 [exp]	17.7	0.7394
AT4G26455		WIP1	WPP domain interacting protein...		Lus10027087 [exp]	18.7	0.7142

Compare expression of checked genes

Lus10040934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.