Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00590 435 / 9e-152 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) AT3G16150 71 / 2e-13 ASPGB1 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009826 [exp] 645 / 0 AT4G00590 446 / 2e-156 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10024795 [exp] 77 / 2e-15 AT3G16150 536 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10034655 [exp] 72 / 7e-14 AT5G08100 507 / 0.0 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Lus10034668 [exp] 63 / 9e-11 AT5G08100 489 / 6e-176 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G080600 [exp] 479 / 1e-168 AT4G00590 486 / 1e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2) Potri.014G022900 [exp] 73 / 4e-14 AT3G16150 556 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.002G122900 [exp] 70 / 5e-13 AT3G16150 540 / 0.0 asparaginase B1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.012G063400 [exp] 66 / 6e-12 AT5G08100 485 / 2e-174 asparaginase A1, N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF01112 [flax] [poplar] Asparaginase_2 Asparaginase
Representative CDS sequence Show only first row Show all	>Lus10040935 pacid=23179939 polypeptide=Lus10040935 locus=Lus10040935.g ID=Lus10040935.BGIv1.0 annot-version=v1.0 ATGGACGGTTGCGACGATGAAGAAGCAAGCCCTAGATTCTTTGTTGCTGTCCACGTTGGTGCAGGATATCACGCTCCTACCAACGAGAAAGCCCTGCGAT CCGCCATGAAACGCGCTTGCACTGTTGCTGCTTCCCTACTTCGCCAGGGTTCTGGGCGATGTATCGACGCTGTCACAGCCGCCATTAAAGTGTTGGAGGA TGATCCGTGTACAAATGCCGGCCGAGGTTCGAATTTAACAGAAGATGGGCGGGTGGAATGCGATGCTAGTGTTATGGATGGCGATTCTGGTTCTTTTGGA GCTGTTGGTGCAGTGTCAGGTGTGAGAAATCCCATCAAGATTGCTGATTTTCTTGCCAAGGAACAGATGGCGGATTCTTCATTGTTGGGTCGAATACCTC CAATGTTTTTGGTAGGCGATGGTGCTCATGCGTGGGCAAGATCAAAAGGCATTCTTTTGGAAGATACCATGGAAGAGGCTGAGAAGTGGCTGGTAACAAA AAGGGCTAAAGCACAGTGGGCAAAGTTCAAAGAAATGCTCCATAGTGCCAATACTTCGATCGACACTTCTGATGGGAAAGAGTCTTCCACAGTGTCAGGA GGAGTTGGTGGTGCTTTATCAGTTGTGCCAACATCTCTCAGAGAAGACTCTGTAATGGACACTGTTGGAGTTGTTTGTGTCGACAATGAAGGACACATAG CTTCTGGAGCCTCTAGTGGTGGTATAGCCCTGAAGGTTGGAGGACGAGTTGGGTTAGCTGCGATGTATGGTTCAGGTTGTTGGGCATCATCAACAAGTCC CTCTGGTGATCCATTCATAGTTGGTGGTTGTGTTTCCGGGGCTGGGGAATCTTTGATGAAAGGATTTGCAGCTCGGGAATGTTGCGTCTCTGCTTCAATT TCTCAGGAAGGCCCTGCATCTGCTAGCAGGAACGTTCTAAGTTCACTAAAACTGGACCGCAACTGCGTTCAAGATGGTGGAAATCAAAGTGCAGGAATTC TACTCGTGCAAGCAGATGCACCAACTGCAACTTCAGACTGCTCAAGAAAGCTGAAAGCTGTAGAGATAGCAGCTGCATTCTCATCCTTGTCTTTCGGGAT AGGTTATCTTGGGAACTCAATGGAACGGCCAAAGGTATCAGTTCTACGGAGAACGAATCTAGGCAAGACAGGAATCGACCATTTCGAAGAACGGATCGAC CTCTCTTCCGGTGGATCTTAG
AA sequence Show only first row Show all	>Lus10040935 pacid=23179939 polypeptide=Lus10040935 locus=Lus10040935.g ID=Lus10040935.BGIv1.0 annot-version=v1.0 MDGCDDEEASPRFFVAVHVGAGYHAPTNEKALRSAMKRACTVAASLLRQGSGRCIDAVTAAIKVLEDDPCTNAGRGSNLTEDGRVECDASVMDGDSGSFG AVGAVSGVRNPIKIADFLAKEQMADSSLLGRIPPMFLVGDGAHAWARSKGILLEDTMEEAEKWLVTKRAKAQWAKFKEMLHSANTSIDTSDGKESSTVSG GVGGALSVVPTSLREDSVMDTVGVVCVDNEGHIASGASSGGIALKVGGRVGLAAMYGSGCWASSTSPSGDPFIVGGCVSGAGESLMKGFAARECCVSASI SQEGPASASRNVLSSLKLDRNCVQDGGNQSAGILLVQADAPTATSDCSRKLKAVEIAAAFSSLSFGIGYLGNSMERPKVSVLRRTNLGKTGIDHFEERID LSSGGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00590			N-terminal nucleophile aminohy...		Lus10040935 [exp]	0	1
AT4G24620		PGI1	phosphoglucose isomerase 1 (.1...		Lus10015959 [exp]	4.5	0.7788
AT4G16150	CAMTA		calmodulin binding;transcripti...		Lus10036455 [exp]	4.5	0.8006
AT5G65380			MATE efflux family protein (.1...		Lus10020951 [exp]	7.6	0.7229
AT3G09370	MYB	ATMYB3R-3, ATMY...	myb domain protein 3R3, myb do...		Lus10025351 [exp]	13.0	0.7518
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	15.6	0.7713
AT5G36930			Disease resistance protein (TI...		Lus10001366 [exp]	26.2	0.7366
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	27.2	0.7545
AT1G70060		SNL4	SIN3-like 4 (.1)		Lus10013293 [exp]	27.3	0.7479
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10011394 [exp]	29.9	0.6645
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	36.6	0.7493

Compare expression of checked genes

Lus10040935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.