Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13410 268 / 1e-90 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G19830 56 / 3e-09 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G60370 47 / 4e-06 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G43560 45 / 1e-05 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT4G26555 42 / 0.0002 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G18170 42 / 0.0002 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT1G73655 40 / 0.0006 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009828 [exp] 336 / 3e-117 AT5G13410 314 / 1e-108 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10036206 [exp] 62 / 2e-11 AT4G19830 260 / 4e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10038345 [exp] 60 / 1e-10 AT4G19830 262 / 3e-89 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10042897 [exp] 57 / 2e-09 AT3G60370 312 / 8e-109 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10028194 [exp] 55 / 2e-08 AT3G60370 305 / 2e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10027246 [exp] 42 / 0.0001 AT1G18170 187 / 2e-59 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10027115 [exp] 41 / 0.0005 AT2G43560 276 / 5e-94 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10008359 [exp] 41 / 0.0006 AT2G43560 273 / 1e-93 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G068300 [exp] 276 / 7e-94 AT5G13410 332 / 4e-116 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.012G119800 [exp] 54 / 1e-08 AT4G19830 270 / 5e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.014G045600 [exp] 52 / 1e-07 AT3G60370 302 / 3e-104 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.001G467100 [exp] 46 / 5e-06 AT4G26555 268 / 3e-92 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.007G134600 [exp] 42 / 0.0001 AT2G43560 286 / 2e-98 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.017G017500 [exp] 40 / 0.0008 AT2G43560 281 / 3e-96 FKBP-like peptidyl-prolyl cis-trans isomerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0487 [flax] [poplar] FKBP PF00254 [flax] [poplar] FKBP_C FKBP-type peptidyl-prolyl cis-trans isomerase
Representative CDS sequence Show only first row Show all	>Lus10040937 pacid=23179898 polypeptide=Lus10040937 locus=Lus10040937.g ID=Lus10040937.BGIv1.0 annot-version=v1.0 ATGGCTATGGCGTCCATTTCATCTGCAGCAGCTGTTCTTCTCAGTTGGAGGTCCTCTTCCTCTTCTTCGTCAGCTACCACACGGCGGAGCAGACCCATCT CATCTCATCAATCTCTTCATCAGTCCCTGGATTCTACACCACCATCCATTGGAAAAACAACCCCAATCACAGACGGTGTTCTTGGCAGGAGACAAGCCTT CCTGATTTCCCTTGGATTGCTACTACCTCGATTTTATAGTGATAGAGTAGCTACTGCTTCTGAATTTGCAGACATGCCTGCACTAAGGGGGAAGGATTAT GGAAAGTCCAAAATGCGGTACCCGGACTATACTGAAACTAGTTCTGGCCTCCAGTATAAGGACCTTCGTCAAGGAACTGGCGCTACGCCTAATGTAGGAG AGACCGTTGTGGTAGATTGGGATGGTTATACAATAGGGTACTATGGCCGGATATTTGAAGCTCGGAATAAGTCCAAAGGTGGTTCCTTTGAGGGAGATGA CAAGGACTTTTTCAAGTTTAAACTGGGATCCGGAGAGGTAATACCAGCATTTGAGGAAGCTGTTTCAGGCATGGCTTTGGGTGGCATTCGAAGGATAGTT GTGCCACCAGAGCTTGGGTACCCTGACAACGACTACAATAAGAGTGCCCCAAGGCCGACCACCTTTTCGGGACAGAGAGCGTTGGACTTTGTGCTGAGGA ACCAAGGTCTGATTGACAAAACTCTGTTGTTTGACATCGAACTCGTTAAAATCGTCCGACCATCAAGCTGA
AA sequence Show only first row Show all	>Lus10040937 pacid=23179898 polypeptide=Lus10040937 locus=Lus10040937.g ID=Lus10040937.BGIv1.0 annot-version=v1.0 MAMASISSAAAVLLSWRSSSSSSSATTRRSRPISSHQSLHQSLDSTPPSIGKTTPITDGVLGRRQAFLISLGLLLPRFYSDRVATASEFADMPALRGKDY GKSKMRYPDYTETSSGLQYKDLRQGTGATPNVGETVVVDWDGYTIGYYGRIFEARNKSKGGSFEGDDKDFFKFKLGSGEVIPAFEEAVSGMALGGIRRIV VPPELGYPDNDYNKSAPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELVKIVRPSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10040937 [exp]	0	1
AT5G16810			Protein kinase superfamily pro...		Lus10016488 [exp]	2.4	0.9458
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	4.2	0.9471
AT1G04620		HCAR	7-hydroxymethyl chlorophyll a ...		Lus10043143 [exp]	4.2	0.9467
AT3G10405			unknown protein		Lus10037959 [exp]	6.9	0.9453
AT4G13670		PTAC5	plastid transcriptionally acti...		Lus10011733 [exp]	7.1	0.9140
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10025080 [exp]	7.7	0.8940
AT1G11340			S-locus lectin protein kinase ...		Lus10024064 [exp]	9.9	0.8786
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10009828 [exp]	10.8	0.9014
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10030538 [exp]	12.0	0.9336
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10042822 [exp]	12.0	0.9320

Compare expression of checked genes

Lus10040937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.