Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00630 568 / 0 ATKEA2, KEA2 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) AT1G01790 567 / 0 ATKEA1, KEA1 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) AT4G04850 177 / 2e-46 ATKEA3, KEA3 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) AT2G19600 67 / 3e-11 ATKEA4 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) AT5G51710 67 / 3e-11 ATKEA5, KEA5 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) AT5G11800 67 / 4e-11 ATKEA6, KEA6 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017823 [exp] 1011 / 0 AT1G01790 660 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Lus10018844 [exp] 590 / 0 AT4G00630 1352 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009830 [exp] 582 / 0 AT4G00630 838 / 0.0 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10009829 [exp] 395 / 2e-133 AT4G00630 372 / 3e-121 K+ efflux antiporter 2, K+ efflux antiporter 2 (.1), K+ efflux antiporter 2 (.2) Lus10007104 [exp] 176 / 2e-46 AT4G04850 936 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020485 [exp] 121 / 1e-28 AT4G04850 704 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10020484 [exp] 71 / 3e-13 AT4G04850 286 / 1e-91 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Lus10008002 [exp] 68 / 2e-11 AT2G19600 781 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1) Lus10040549 [exp] 67 / 4e-11 AT2G19600 851 / 0.0 K+ efflux antiporter 4, K+ efflux antiporter 4, K+ efflux antiporter 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G080800 [exp] 600 / 0 AT1G01790 1300 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.002G157200 [exp] 589 / 0 AT1G01790 1343 / 0.0 K+ efflux antiporter 1, K+ EFFLUX ANTIPORTER 1, K+ efflux antiporter 1 (.1) Potri.009G080800 [exp] 168 / 2e-43 AT4G04850 841 / 0.0 K+ efflux antiporter 3, K+ efflux antiporter 3 (.1), K+ efflux antiporter 3 (.2) Potri.015G132400 [exp] 67 / 3e-11 AT5G51710 791 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.012G130500 [exp] 66 / 6e-11 AT5G51710 830 / 0.0 K+ efflux antiporter 5, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 5, K+ efflux antiporter 5 (.1), K+ efflux antiporter 5 (.2) Potri.006G230400 [exp] 63 / 5e-10 AT5G11800 731 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1) Potri.018G054100 [exp] 63 / 6e-10 AT5G11800 740 / 0.0 K+ efflux antiporter 6, ARABIDOPSIS THALIANA K+ EFFLUX ANTIPORTER 6, K+ efflux antiporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF02254 [flax] [poplar] TrkA_N TrkA-N domain CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10040938 pacid=23179605 polypeptide=Lus10040938 locus=Lus10040938.g ID=Lus10040938.BGIv1.0 annot-version=v1.0 ATGGCTGAGCAAGCTGTTGCTGTCGAACTTGAGGCTGCCCAGCGTGTGAGTTTTGCAGAAATTGCATTACGCAGAGCAGAAAAGTTCCTCTCTGGGTCTA ATGTTGATACCTCCGAGACAGCACAGGGATACTTTTCTGGTGACGAGGCTGTTCTCGAGGGCGAGAAGGTAGACAAAGAGCTCAATGTTGATATTGGAAA AGAAATTGATTTGCTAACCTATGGGGATGTGTTAGTTGGTGAGCCTGTTCAGGAGAGACTGTCTGATAAAACAAGTCTTAGTGCTAAAGACTTGGCTCAA ATTGACAATACTTCCAATCAAGAGAAGAATGGACAAGCGAGAATTGACCGGCCACAAGCTAGGAAACAGGAAATGCAGAAGGATGCAATGAAAGAGAGCT CACCTCCACCTCAAAAGGCATCATTGAAAAAATCTTCCCGTTTCTTCTCTGCATCGTTCTTCTCGTTCGCTGTTGATGGCGCCGAGTTCACTCCAGCATC AGTTTTCCAAAGTCTTATGCAGTCTGCAAAGAACCAATTGCCTAAGCTTGTTGTTGGCCTGCTGCTGGTTGGAGGAGGGGTTGCATTCTACGGTAATCGG GTAGATAGGAGGTCTCAGATGCTTCAACACTCGGAGATTGTCACCTCCAGCATTGATGAAGTTTTCTCCAGTGCAAAACCCTTGATTATCAATGAGGAGG AGGCTTCTCTTATTGATATGCTGTGGTTACTTCTTGCCAGTGTCATATTTGTGCCGATCTTTCAGAAAATTCCTGGAGGTAGTCCTGTTCTTGGCTACTT GGCTGCTGGCATTTTGATTGGTCCTTATGGCCTGTCTATCATCCGTAATGTGCATGGAACAAAGGCGATTGCTGAATTCGGAGTTGTTTTCCTGCTGTTC AATATTGGCCTTGAGCTGTCTGTTGAAAGACTTAGTTCCATGAAGAAATATGTCTTTGGATTAGGCTCAGCTCAGGTCTTGGTAACCGCAGTTACTGTGG GTATGGCTGCATATATTCTTGCTGGGCTACCTGGTCCTGCTGCAATTGTCATTGGGAATGGTTTAGCATTATCTTCAACTGCTGTTGTTCTACAGGTTGG TTTTCAGGCAATAGCTGAGGCTCTTGGAGCTGCTGCTGTTAAAGCCGCGGGACTCTCCATGGCACTGGGGGCATTTCTAGCTGGTCTGCTCCTTGCTGAA ACTGAATTTTCATTGCAAGTTGAATCAGATATTGCTCCGTACCGCGGTCTTCTCTTGGGTCTCTTCTTCATGACAGTTGGAATGTCAATTGATCCGAAAC TGCTCCTTTCAAATTTCCCTGTCGTTATGGGGACACTGGGGCTGCTAATAGCATGGAAGACACTTTTGGTTACGTTAGTTGGCAAGGTCTTTGGTGTTTC CATTATATCTGCAATAAGAGCTGGCCTCCTTCTTGCTCCTGGTGGCGAATTCGCATTTGTGGCTTTTGGCGAGGCTGTCAATCAGGGTATAATGTCTCCT CAGCTGTCATCCTTGCTGTTTCTTGTCGTGGGAATCTCTATGGCCATAACTCCATGGCTAGCTGCTGGTGGTCAGCTAATTGCCTCCCGTTTTGAGTTGC TTGATGTTCGAAGTCTCTTGCCGGTTGAAAGCGAGACGGATGACTTGCAGGACCACATTATTATCTGTGGATTTGGACGTGTTGGCCAGATTATTGCACA GCTTCTTTCAGAGCGATTGATTCCATTTGTCGCCATTGATGTCAGAAGCGATAGGGTCACATTTGGACGAGCATTAGACCTTCCAGTGTACTTTGGAGAT GCTGGTAGCCGTGAGATCCTCCATAAACTTGGAGCTGACCGAGCCTGCTCTGCAGCGATAACATTGGACACACCTGGTGCAAACTACAGAGCTGTTTGGG CTCTCAGCAAGTACTTCCCAAACGTTAAGACCTTTGTGCGGGCGCACGATGTAGACCATGGCCTTAACTTGGAAAAAGCTGGAGCCTCTGCCGTTGTCCC GGAGACCTTAGAACCAAGTCTACAGTTGGCTGCTGCTGTTCTTGCACAGGCAAAACTTCCAGCATCTGAGATTGCAGCAACGATAAACGAATTCAGATCC CGTCATTTGTCTGAACTCACAGAGCTATCTGAAGCCAGTGGAAGCTCCCTTGGCTATGGATTTTCTCGCGAGATGAGTAAGCCAAAAGCTCCCCCGTCCT CTGATTCTTCTGACGAAAACCAAATGACAGAAGGAACCCTGGCCGTATGA
AA sequence Show only first row Show all	>Lus10040938 pacid=23179605 polypeptide=Lus10040938 locus=Lus10040938.g ID=Lus10040938.BGIv1.0 annot-version=v1.0 MAEQAVAVELEAAQRVSFAEIALRRAEKFLSGSNVDTSETAQGYFSGDEAVLEGEKVDKELNVDIGKEIDLLTYGDVLVGEPVQERLSDKTSLSAKDLAQ IDNTSNQEKNGQARIDRPQARKQEMQKDAMKESSPPPQKASLKKSSRFFSASFFSFAVDGAEFTPASVFQSLMQSAKNQLPKLVVGLLLVGGGVAFYGNR VDRRSQMLQHSEIVTSSIDEVFSSAKPLIINEEEASLIDMLWLLLASVIFVPIFQKIPGGSPVLGYLAAGILIGPYGLSIIRNVHGTKAIAEFGVVFLLF NIGLELSVERLSSMKKYVFGLGSAQVLVTAVTVGMAAYILAGLPGPAAIVIGNGLALSSTAVVLQVGFQAIAEALGAAAVKAAGLSMALGAFLAGLLLAE TEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPVVMGTLGLLIAWKTLLVTLVGKVFGVSIISAIRAGLLLAPGGEFAFVAFGEAVNQGIMSP QLSSLLFLVVGISMAITPWLAAGGQLIASRFELLDVRSLLPVESETDDLQDHIIICGFGRVGQIIAQLLSERLIPFVAIDVRSDRVTFGRALDLPVYFGD AGSREILHKLGADRACSAAITLDTPGANYRAVWALSKYFPNVKTFVRAHDVDHGLNLEKAGASAVVPETLEPSLQLAAAVLAQAKLPASEIAATINEFRS RHLSELTELSEASGSSLGYGFSREMSKPKAPPSSDSSDENQMTEGTLAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10040938 [exp]	0	1
AT1G79870			D-isomer specific 2-hydroxyaci...		Lus10011442 [exp]	5.7	0.8436
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10038641 [exp]	11.0	0.8295
AT4G19110			Protein kinase superfamily pro...		Lus10033278 [exp]	17.2	0.8188
AT3G57620			glyoxal oxidase-related protei...		Lus10015949 [exp]	19.8	0.7982
AT1G49710		ATFUT12, FUCTB,...	fucosyltransferase 12 (.1)		Lus10019855 [exp]	25.1	0.8113
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	26.2	0.8225
AT5G26240		ATCLC-D, CLC-D	chloride channel D (.1)		Lus10010531 [exp]	37.5	0.8124
AT3G01650		RGLG1	RING domain ligase1 (.1)		Lus10032097 [exp]	40.6	0.8067
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026892 [exp]	45.1	0.7732
AT2G22300	CAMTA	SR1, CAMTA3	CALMODULIN-BINDING TRANSCRIPTI...		Lus10041704 [exp]	50.8	0.7781

Compare expression of checked genes

Lus10040938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.