Plant FIBer expression Database

Lus10040939 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56010 137 / 1e-40 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G070700
[exp]
167 / 4e-52 AT3G56010 171 / 1e-53 unknown protein
Potri.010G186800
[exp]
166 / 2e-51 AT3G56010 172 / 6e-54 unknown protein
PFAM info
Representative CDS sequence
>Lus10040939 pacid=23179778 polypeptide=Lus10040939 locus=Lus10040939.g ID=Lus10040939.BGIv1.0 annot-version=v1.0
ATGGCAGTTTCTCTCAACTCAGTTTTTGGCTTCAACTCCTCGTTGCCAACCAAGAATTGGCATGCCATCTCTTCTGCTGCATTCCCAAACTCCTTGGCTA
TGTTTGGTTCCTCCTCCTTAAAGCTACAATCTAGTTCGCGAAACTCCGGTTCAATTCCATCAGTTGCAGATAGTGATCGACTTGCCACTGACACCAATGA
CAAAGGTTCAAGTGAACAACTTGGACAAGCATCCGAAGCTTCTTCCAATCTTTCCTCGTCCAGCGCCAAAAGATCACCTCTAACAGCTAGGGAGAGACTC
AAGGCTGCCAGAGTCCTGAGCCGCAACGCTGAATCAAAGCCATCAAAACCATCGGACATGGGAAAGAACGTGATTGATGCTCTGAGAGAGAGCGACAAGG
GGAGGAAAAGGTCTAGACTTCCTGAAGCCCCAACAAACATGCTGGATGATGCCAGGAGGGGACTGTCGAAACCTGGATGGACGTTCGACTTCCCGGGGGG
TACGGATCTGCTAGTCATTGTCTTCTCATTTGTGTTCATTAGTACTGTCATGTTCGCTACCACTTACGTTGTCTGGAAAGTTGGTGCCATTCACTTTAAT
GAGTATTAG
AA sequence
>Lus10040939 pacid=23179778 polypeptide=Lus10040939 locus=Lus10040939.g ID=Lus10040939.BGIv1.0 annot-version=v1.0
MAVSLNSVFGFNSSLPTKNWHAISSAAFPNSLAMFGSSSLKLQSSSRNSGSIPSVADSDRLATDTNDKGSSEQLGQASEASSNLSSSSAKRSPLTARERL
KAARVLSRNAESKPSKPSDMGKNVIDALRESDKGRKRSRLPEAPTNMLDDARRGLSKPGWTFDFPGGTDLLVIVFSFVFISTVMFATTYVVWKVGAIHFN
EY

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56010 unknown protein Lus10040939
[exp]
0 1
AT5G27560 Domain of unknown function (DU... Lus10029929
[exp]
1.4 0.9186
AT1G68830 STN7 STT7 homolog STN7 (.1) Lus10034273
[exp]
1.4 0.9155
AT2G24060 Translation initiation factor ... Lus10036595
[exp]
2.8 0.8798
AT5G61040 unknown protein Lus10021155
[exp]
3.5 0.8870
AT1G75100 JAC1 J-domain protein required for ... Lus10018811
[exp]
3.9 0.8798
AT5G59400 unknown protein Lus10040799
[exp]
4.9 0.8716
AT5G58140 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LI... Lus10026572
[exp]
5.8 0.8406
AT1G43670 FINS1, AtcFBP FRUCTOSE INSENSITIVE 1, Arabid... Lus10028580
[exp]
6.2 0.8482
AT4G17740 Peptidase S41 family protein (... Lus10004402
[exp]
6.7 0.8540
AT3G26580 Tetratricopeptide repeat (TPR)... Lus10006208
[exp]
7.1 0.8294

Lus10040939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.