Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54200 63 / 8e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT2G46150 50 / 4e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT4G23930 44 / 2e-05 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2) AT1G64450 42 / 0.0002 Glycine-rich protein family (.1) AT1G64065 41 / 0.0004 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) AT3G44380 40 / 0.0004 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009831 [exp] 303 / 1e-104 AT3G54200 54 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039664 [exp] 214 / 2e-70 AT2G46150 74 / 3e-16 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027177 [exp] 208 / 8e-68 AT2G46150 77 / 2e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10031554 [exp] 124 / 4e-35 AT3G54200 64 / 1e-12 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027179 [exp] 120 / 1e-33 AT4G23610 52 / 3e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039662 [exp] 120 / 2e-33 AT4G23610 50 / 1e-07 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10027178 [exp] 114 / 3e-31 AT2G46150 47 / 2e-06 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10015120 [exp] 111 / 4e-30 AT2G46150 56 / 8e-10 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10039665 [exp] 100 / 2e-25 AT3G54200 52 / 2e-08 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G230400 [exp] 103 / 3e-27 AT2G46150 82 / 3e-19 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.011G025100 [exp] 94 / 2e-23 AT2G46150 77 / 3e-17 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G133400 [exp] 74 / 1e-15 AT2G46150 164 / 7e-51 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142300 [exp] 73 / 2e-15 AT3G54200 162 / 3e-50 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.002G165100 [exp] 67 / 2e-13 AT2G46150 184 / 1e-58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112800 [exp] 67 / 3e-13 AT3G54200 159 / 7e-49 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.001G098100 [exp] 64 / 4e-12 AT2G46150 171 / 2e-53 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.006G112700 [exp] 62 / 1e-11 AT3G05975 127 / 6e-37 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.016G142200 [exp] 59 / 2e-10 AT3G05975 105 / 2e-28 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Potri.003G141200 [exp] 52 / 4e-08 AT4G23930 176 / 3e-56 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1), Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [flax] [poplar] E-set PF03168 [flax] [poplar] LEA_2 Late embryogenesis abundant protein CL0652 [flax] [poplar] S24e_L23_L15e PF05162 [flax] [poplar] Ribosomal_L41 Ribosomal protein L41
Representative CDS sequence Show only first row Show all	>Lus10040941 pacid=23179990 polypeptide=Lus10040941 locus=Lus10040941.g ID=Lus10040941.BGIv1.0 annot-version=v1.0 ATGATGAAGAGCAGCAGGAATCCCGCAGTCAGAGTTTGCTGCATATCCGCCACCGTCGTAATCGTCATCACAGCTATTGTTCTAGTGACACTCGCCTTCA CAGTTTTCAAGCCCCATGACCCGGAGGTCGTGCTCTACCCGGTCGGGTTGGCCAAAATCCAAATGGAGGATTTCATCGCGAAGGACAACGTCACTAGCGA GATGATCATGAGCGTTCGCAACAGAAATTACGCCAGCTTTCGATTCGAGAACTCGACCAGTAGCATCATTTACGACGGGGAGGAAGTTGGTGAGGTTCCC ATCCCCGCAGGCAAAATGCAGGCTCGATCGGTGATGAACATCACGTCTTCCGCCACTTTGATGGTGGGTAAGTTGAGAGCCAACCCGAAGGCGATCAACG ACATTTTGGGAGGGAGTTTGAACTTTACTGCCAAGGTGACGATGCACGGGAAAATGTCGATGATGAAGCAGACGATCAAGAAGCAAGGTTGGGTGTACAC TGAATGCTACCTCACCATAAAGCTACATATCTTGGAAGAAATTGAGCCCCATACGGCCATCCACAATGTGAGGGGTTTGTCTGATGTGCCAGCTTTCCTG AAATGTCGAATCAGAAGGTTTATCCCTGTCAAAACAGAGAAAAGAGAAGAACCGGAGCAGCTTGAGGATTTCATCGCGATGAGGGCTAAGTGGAAGAAGA AGCGTATGAGGAGGTTGAAGAGGAAGCGCCGAAAGATGAGACAGAGATCTAAGTAG
AA sequence Show only first row Show all	>Lus10040941 pacid=23179990 polypeptide=Lus10040941 locus=Lus10040941.g ID=Lus10040941.BGIv1.0 annot-version=v1.0 MMKSSRNPAVRVCCISATVVIVITAIVLVTLAFTVFKPHDPEVVLYPVGLAKIQMEDFIAKDNVTSEMIMSVRNRNYASFRFENSTSSIIYDGEEVGEVP IPAGKMQARSVMNITSSATLMVGKLRANPKAINDILGGSLNFTAKVTMHGKMSMMKQTIKKQGWVYTECYLTIKLHILEEIEPHTAIHNVRGLSDVPAFL KCRIRRFIPVKTEKREEPEQLEDFIAMRAKWKKKRMRRLKRKRRKMRQRSK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54200			Late embryogenesis abundant (L...		Lus10040941 [exp]	0	1
AT2G19740			Ribosomal protein L31e family ...		Lus10018032 [exp]	2.2	0.8828
AT3G23620			Ribosomal RNA processing Brix ...		Lus10027714 [exp]	4.7	0.8520
AT1G64350		SEH1H	Transducin/WD40 repeat-like su...		Lus10003896 [exp]	6.0	0.8461
AT5G13830			FtsJ-like methyltransferase fa...		Lus10040283 [exp]	6.7	0.7962
AT1G18070			Translation elongation factor ...		Lus10018000 [exp]	6.9	0.7724
AT3G52570			alpha/beta-Hydrolases superfam...		Lus10016992 [exp]	8.7	0.8486
AT5G02610			Ribosomal L29 family protein ...		Lus10019180 [exp]	8.8	0.8036
AT1G76405			unknown protein		Lus10025161 [exp]	10.2	0.8279
AT3G54200			Late embryogenesis abundant (L...		Lus10009831 [exp]	10.2	0.8443
AT1G26880			Ribosomal protein L34e superfa...		Lus10042199 [exp]	13.3	0.8210

Compare expression of checked genes

Lus10040941 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.