Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11110 89 / 2e-22 RING/U-box superfamily protein (.1) AT3G10910 80 / 8e-19 RING/U-box superfamily protein (.1) AT1G23980 78 / 3e-17 RING/U-box superfamily protein (.1) AT5G27420 78 / 4e-17 CNI1, ATL31 carbon/nitrogen insensitive 1 (.1) AT5G05280 75 / 6e-17 RING/U-box superfamily protein (.1) AT3G18930 76 / 2e-16 RING/U-box superfamily protein (.1.2) AT3G05200 76 / 4e-16 ATL6 RING/U-box superfamily protein (.1) AT1G04360 76 / 4e-16 RING/U-box superfamily protein (.1) AT1G72200 74 / 1e-15 RING/U-box superfamily protein (.1) AT2G27940 72 / 2e-15 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009832 [exp] 276 / 6e-96 AT3G11110 104 / 7e-29 RING/U-box superfamily protein (.1) Lus10027736 [exp] 79 / 9e-19 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1) Lus10002194 [exp] 79 / 5e-18 AT2G42360 153 / 4e-46 RING/U-box superfamily protein (.1) Lus10029037 [exp] 77 / 5e-18 AT3G10910 166 / 9e-53 RING/U-box superfamily protein (.1) Lus10037490 [exp] 81 / 6e-18 AT3G16720 224 / 2e-70 TOXICOS EN LEVADURA 2 (.1) Lus10006493 [exp] 77 / 7e-17 AT3G16720 221 / 5e-71 TOXICOS EN LEVADURA 2 (.1) Lus10016163 [exp] 75 / 9e-17 AT2G27940 133 / 1e-38 RING/U-box superfamily protein (.1) Lus10029794 [exp] 76 / 4e-16 AT1G72200 219 / 1e-66 RING/U-box superfamily protein (.1) Lus10005818 [exp] 72 / 4e-16 AT1G49230 140 / 1e-42 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071000 [exp] 127 / 2e-37 AT3G11110 122 / 3e-36 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 82 / 6e-19 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 81 / 1e-18 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1) Potri.011G063100 [exp] 80 / 2e-18 AT2G42350 106 / 3e-28 RING/U-box superfamily protein (.1) Potri.013G157000 [exp] 76 / 2e-17 AT3G10910 114 / 1e-32 RING/U-box superfamily protein (.1) Potri.006G144200 [exp] 76 / 2e-17 AT5G17600 90 / 3e-21 RING/U-box superfamily protein (.1) Potri.019G130100 [exp] 75 / 5e-17 AT5G05280 129 / 5e-38 RING/U-box superfamily protein (.1) Potri.001G212101 [exp] 76 / 7e-17 AT2G27940 96 / 2e-23 RING/U-box superfamily protein (.1) Potri.009G110000 [exp] 76 / 3e-16 AT3G18930 227 / 5e-70 RING/U-box superfamily protein (.1.2) Potri.008G219200 [exp] 75 / 3e-16 AT3G16720 197 / 2e-61 TOXICOS EN LEVADURA 2 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040942 pacid=23180034 polypeptide=Lus10040942 locus=Lus10040942.g ID=Lus10040942.BGIv1.0 annot-version=v1.0 ATGGCTTCAACATCATCGTCGTCATTGAAAGAGTCGTCCCGACCAGACCACTGGCACTTCACTGAGCTCGAGGACCACCAGTTCCAAATCCGAGGCCGGA CGGTCTTCTTCGCCATCCTTACCTTTGCACTCGTGCTATTCATTGTCCTCCTCCTCCTCTGTACTCGCTGGCTCTACCGTTACCGCCAACGCCGTAACGG ACTCTCCCACGCGCCCCGCTCGTCCGACGGGAATCCTCAGTACTGCCGTGGGATTGACGCGCTGACGATCGCTGCCATACCCATTACCCTACACTCCTCC TCCGCGGATGATCAGGATTCCGCAATAATGGAGTGCTGTATTTGCCTAGGTACGTTTGAAGACGGGGACAAAGTCAAGTCCTTGCCACGCTGTCACCATT GTTTCCACTCGGAGTGCGTTGACCGGTGGCTTCTCGCCCACTGTGATTGCCCGCTATGCAGAGCTTCAGTAGTTGACCCGGTCCGCGAGCAAGTAGTCAT AGTCATTGACTCTGCCGAGGAACCGGAAATGAGTAGCGGATCAGGTGGTGTTGATGTCTGA
AA sequence Show only first row Show all	>Lus10040942 pacid=23180034 polypeptide=Lus10040942 locus=Lus10040942.g ID=Lus10040942.BGIv1.0 annot-version=v1.0 MASTSSSSLKESSRPDHWHFTELEDHQFQIRGRTVFFAILTFALVLFIVLLLLCTRWLYRYRQRRNGLSHAPRSSDGNPQYCRGIDALTIAAIPITLHSS SADDQDSAIMECCICLGTFEDGDKVKSLPRCHHCFHSECVDRWLLAHCDCPLCRASVVDPVREQVVIVIDSAEEPEMSSGSGGVDV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G11110			RING/U-box superfamily protein...		Lus10040942 [exp]	0	1
AT1G78110			unknown protein		Lus10027930 [exp]	4.5	0.7399
AT1G78110			unknown protein		Lus10012052 [exp]	8.9	0.7255
AT5G62940	DOF	AtDof5.6, HCA2	HIGH CAMBIAL ACTIVITY2, DNA BI...		Lus10002381 [exp]	9.4	0.7582
AT5G40960			Protein of unknown function (D...		Lus10035200 [exp]	10.6	0.7308
AT1G55190		PRA7, PRA1.F2	PRENYLATED RAB ACCEPTOR 1.F2, ...		Lus10015631 [exp]	13.0	0.7485
AT1G69160			unknown protein		Lus10036813 [exp]	13.4	0.7503
AT5G60200	DOF	TMO6, AtDof5,3	TARGET OF MONOPTEROS 6 (.1)		Lus10015425 [exp]	14.3	0.6674
AT2G39210			Major facilitator superfamily ...		Lus10014640 [exp]	15.7	0.7356
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10040305 [exp]	28.8	0.7031
AT1G26920			unknown protein		Lus10012840 [exp]	30.7	0.6773

Compare expression of checked genes

Lus10040942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.