Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009833 [exp] 224 / 2e-76 AT4G23180 39 / 7e-04 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007504 [exp] 134 / 2e-40 AT3G22040 42 / 3e-05 Domain of unknown function (DUF26) (.1) Lus10028980 [exp] 131 / 3e-39 AT3G21945 39 / 9e-04 Receptor-like protein kinase-related family protein (.1) Lus10026810 [exp] 44 / 7e-06 AT1G63600 41 / 1e-04 Receptor-like protein kinase-related family protein (.1) Lus10022828 [exp] 42 / 3e-05 AT2G01660 43 / 2e-05 plasmodesmata-located protein 6 (.1.2) Lus10028026 [exp] 41 / 6e-05 AT4G23290 44 / 1e-05 cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 21 (.2) Lus10028018 [exp] 41 / 8e-05 ND 39 / 5e-04 Lus10011894 [exp] 40 / 0.0001 AT3G60720 38 / 9e-04 plasmodesmata-located protein 8 (.1) Lus10020814 [exp] 41 / 0.0002 AT5G37660 311 / 2e-106 plasmodesmata-located protein 7 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208400 [exp] 41 / 6e-05 AT5G48540 52 / 1e-08 receptor-like protein kinase-related family protein (.1) Potri.004G026350 [exp] 40 / 0.0003 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01657 [flax] [poplar] Stress-antifung Salt stress response/antifungal
Representative CDS sequence Show only first row Show all	>Lus10040943 pacid=23179857 polypeptide=Lus10040943 locus=Lus10040943.g ID=Lus10040943.BGIv1.0 annot-version=v1.0 ATGGCTCGCCTAGTGATCGTGTTCACAGTCTTCGCCCTCACATTCGGGTCATTCTGCGGACCAGTCAACACCTCCGACGAGGACGATAACTCTTCGGCCG CATCACCATCACCTCAGGCGACGACTAAGCCGACGACTTCGGGAGTGGTCTGCGACAAGACGAATTACACGAACGTGTACCCGACCAACAGTTACGTGAA GCATGTCCTTGAGGAGCTGAGCGAAGAAGTGAGCAACAGCAAGGGTTACGCCAAGCTCATCAAGTTCCCCGAAATCGACCGGCCGATTATGTCCGGTCAG GGGACATGCAAGAAGAACATGACCCAGACGGAATGCGCCAAGTGTATTAAGGACGGCGTGAAGATTGTGCTTGATAGATGCCCGCAGCGGGTTGGAGCTC AGTTCACTGCCGCCAAGTGCAAACTGAGGTACGACGTTTTCCATGCCTAG
AA sequence Show only first row Show all	>Lus10040943 pacid=23179857 polypeptide=Lus10040943 locus=Lus10040943.g ID=Lus10040943.BGIv1.0 annot-version=v1.0 MARLVIVFTVFALTFGSFCGPVNTSDEDDNSSAASPSPQATTKPTTSGVVCDKTNYTNVYPTNSYVKHVLEELSEEVSNSKGYAKLIKFPEIDRPIMSGQ GTCKKNMTQTECAKCIKDGVKIVLDRCPQRVGAQFTAAKCKLRYDVFHA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10040943 [exp]	0	1
AT3G54030			Protein kinase protein with te...		Lus10035550 [exp]	8.4	0.6994
AT2G28100		ATFUC1	alpha-L-fucosidase 1 (.1)		Lus10031681 [exp]	23.2	0.6758
AT1G72880			Survival protein SurE-like pho...		Lus10008390 [exp]	26.2	0.6737
AT5G48460			Actin binding Calponin homolog...		Lus10038235 [exp]	26.8	0.6760
AT2G17550			unknown protein		Lus10016693 [exp]	29.7	0.6631
AT4G23820			Pectin lyase-like superfamily ...		Lus10001899 [exp]	39.1	0.6602
AT5G50020			DHHC-type zinc finger family p...		Lus10020844 [exp]	42.2	0.6304
AT2G01420		PIN4, ATPIN4	ARABIDOPSIS PIN-FORMED 4, Auxi...		Lus10020829 [exp]	47.0	0.6525
AT2G42380	bZIP	ATBZIP34	Basic-leucine zipper (bZIP) tr...		Lus10033630 [exp]	47.8	0.6440
AT5G57480			P-loop containing nucleoside t...		Lus10006968 [exp]	54.0	0.6111

Compare expression of checked genes

Lus10040943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.