Plant FIBer expression Database

Lus10040946 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05520 625 / 0 Outer membrane OMP85 family protein (.1)
AT3G11070 609 / 0 Outer membrane OMP85 family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009835
[exp]
1001 / 0 AT5G05520 625 / 0.0 Outer membrane OMP85 family protein (.1)
Lus10007514
[exp]
743 / 0 AT5G05520 600 / 0.0 Outer membrane OMP85 family protein (.1)
Lus10017441
[exp]
739 / 0 AT5G05520 597 / 0.0 Outer membrane OMP85 family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G071800
[exp]
657 / 0 AT5G05520 626 / 0.0 Outer membrane OMP85 family protein (.1)
Potri.010G185600
[exp]
652 / 0 AT5G05520 651 / 0.0 Outer membrane OMP85 family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0193 MBB PF01103 Omp85 Omp85 superfamily domain
Representative CDS sequence
>Lus10040946 pacid=23179766 polypeptide=Lus10040946 locus=Lus10040946.g ID=Lus10040946.BGIv1.0 annot-version=v1.0
ATGGCCAACCCCGATGACTTGAAGCCGGGCCCGATGTCCGAAAACCCTAAAAACGACGCAGACGATGTCGAAGACGAGAATGGCGACACCGGATACGAAG
AAGACGCGGAAGATCATGAGCTCGATGAGGAAGAAGAGGTTGAACCGGAACCGCGGGATCCAAGAGGGCGAATTCCGCCATCCGCCGTCGGAATGCAAAA
GGCAAAGCTGCAGAACCTCTTCCAGCGGTTGCAGACGCAGAGAGTGCCGCTTCGAGTTCACGATGTGCTCATCAAGGGCAACACGAAGACTAAGGATTAC
CTAATCGAAGCGGAGGTCGCGCTGCTTAAGAACTGCACAAGTATGCAGGAGATCCTCGAGGTCTCCAGAGCTGTGAGCTTTAGGCTGCAAGCGCTCGAGA
TTTTCGATTCTGTAAATATCACGCTCGATTCCGGTCCTCCGGAGCTCCCTGGGACGTCTACTGTCATCGTAGAGGTCCAGGAGGCTAAATCTATGACTGG
TGAAGTTGGAGCGTACTCAAAGGGCTTGGAGGCTAAAGCTTCAACAATTGAAGGAACATTGAAGTTCAAAAATTTGTTTGGCCATGGGGATCTTTGGGAT
GGCACTTTTGCGTATGGCTGGGACCATTTGGCAGAGGTAAGTGCTGGTGTGCATTTTCCAAGATTCAGAGGATCTTCTACTCCTCTGGATGTCCGTGCAT
TCCTGCTATCCCAAGATTGGCTGGAGTTCTCTTCATTCAAAGAGAGATCAATGGGTCTTTCTGTTAACTTGCTCTCCACTGGGAACCATGACTTGGTGTA
CAATCTCGGATGGCGTACTTTGATGGATCCTTCACAAATGGCATCCAGATCAGTGAGGAGACAGCTTGGCCACAGTTTACTCTCATCTTTGAAATATACA
TTCAAGGTTGACAGGAGAAATTCACCTTTGCGGCCAGTGCGGGGATATGCTTTTGCTGCTACCTCTCAAATTGCGGGCCTTGCACCTGATAGTCGGTTCT
TACGTTTCGTACGCCAGGAGGTTGACCTTCGTTATGCCATGCCTCTTGGATTTCTTAATGCTGCACTTAACTTGGGGATCTCTGGCGGTGTTGTTTATCC
ATGGGGGAATGGCTCCTCAAGCATGGCTTCACCTCTCCCCGACAGGTTCTTTCTAGGAGGCAATTCATCTCCAATCTGCCACCTGGGAGGCCCAACAACG
TTATGGGGATATAGAACCCGGGGAGTTGGTCCTACAGAGCCAAGAAGGCATCCAAACAGCGATGCTGGTGATGAGAATGCTCATCCTGGAGTTGATTATA
TCGGAGGAGATCTTGCTGTTACTGCTTTTGCAGATCTTTCTTTCGATTTGCCACTGAAATGGTTCAGAGCAAGAGGAATCCACGGGCACGTATTCACATC
GGCTGGTAATCTTGAGAAATTAACACAAAATGCATACAAAGATTTCTCTTTGCAGAAGTTTGCATCTTCCTTTCGAACCTCAGTGGGTGCTGGGATTGTT
ATTCCAATGCGCCCATTCCGTCTTGAGCTGAACTACTACCACAAGGTGAAGACACATGAACATGACGGTGGGAAGCCCGGATTTGGTGTGACTTTCTCTG
CATCTGCATAG
AA sequence
>Lus10040946 pacid=23179766 polypeptide=Lus10040946 locus=Lus10040946.g ID=Lus10040946.BGIv1.0 annot-version=v1.0
MANPDDLKPGPMSENPKNDADDVEDENGDTGYEEDAEDHELDEEEEVEPEPRDPRGRIPPSAVGMQKAKLQNLFQRLQTQRVPLRVHDVLIKGNTKTKDY
LIEAEVALLKNCTSMQEILEVSRAVSFRLQALEIFDSVNITLDSGPPELPGTSTVIVEVQEAKSMTGEVGAYSKGLEAKASTIEGTLKFKNLFGHGDLWD
GTFAYGWDHLAEVSAGVHFPRFRGSSTPLDVRAFLLSQDWLEFSSFKERSMGLSVNLLSTGNHDLVYNLGWRTLMDPSQMASRSVRRQLGHSLLSSLKYT
FKVDRRNSPLRPVRGYAFAATSQIAGLAPDSRFLRFVRQEVDLRYAMPLGFLNAALNLGISGGVVYPWGNGSSSMASPLPDRFFLGGNSSPICHLGGPTT
LWGYRTRGVGPTEPRRHPNSDAGDENAHPGVDYIGGDLAVTAFADLSFDLPLKWFRARGIHGHVFTSAGNLEKLTQNAYKDFSLQKFASSFRTSVGAGIV
IPMRPFRLELNYYHKVKTHEHDGGKPGFGVTFSASA

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G05520 Outer membrane OMP85 family pr... Lus10040946
[exp]
0 1
AT1G50410 SNF2 domain-containing protein... Lus10013452
[exp]
4.5 0.9092
AT5G06600 AtUBP12, UBP12 ubiquitin-specific protease 12... Lus10028871
[exp]
7.9 0.9098
AT5G07740 actin binding (.1) Lus10015724
[exp]
12.2 0.8941
AT4G39850 AtABCD1, ACN2, ... PEROXISOME DEFECTIVE 3, COMATO... Lus10024056
[exp]
13.0 0.8930
AT2G19950 GC1 golgin candidate 1 (.1.2) Lus10034941
[exp]
14.5 0.8727
AT5G16210 HEAT repeat-containing protein... Lus10009154
[exp]
17.5 0.8929
AT3G28860 ABCB19, ATMDR11... P-GLYCOPROTEIN 19, MULTIDRUG R... Lus10013178
[exp]
19.8 0.8854
AT1G60070 Adaptor protein complex AP-1, ... Lus10030848
[exp]
22.2 0.8903
AT4G12750 Homeodomain-like transcription... Lus10012302
[exp]
24.2 0.8759
AT1G08420 BSL2 BRI1 suppressor 1 (BSU1)-like ... Lus10008369
[exp]
25.0 0.8872

Lus10040946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.