Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05510 356 / 3e-118 Mad3/BUB1 homology region 1 (.1) AT2G33560 103 / 9e-24 BUBR1 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) AT2G20635 77 / 1e-14 ATP binding;protein kinases;protein serine/threonine kinases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009836 [exp] 902 / 0 AT5G05510 390 / 2e-131 Mad3/BUB1 homology region 1 (.1) Lus10013199 [exp] 103 / 1e-23 AT2G33560 426 / 1e-148 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10030714 [exp] 100 / 1e-22 AT2G33560 417 / 4e-145 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Lus10017714 [exp] 81 / 7e-16 AT2G20635 604 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1) Lus10033673 [exp] 79 / 3e-15 AT2G20635 620 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G071900 [exp] 264 / 2e-81 AT5G05510 253 / 1e-77 Mad3/BUB1 homology region 1 (.1) Potri.010G185500 [exp] 255 / 5e-78 AT5G05510 261 / 8e-81 Mad3/BUB1 homology region 1 (.1) Potri.005G258300 [exp] 97 / 1e-21 AT2G33560 480 / 4e-170 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.002G002900 [exp] 95 / 7e-21 AT2G33560 460 / 8e-162 BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.1), BUB1-related (BUB1: budding uninhibited by benzymidazol 1) (.2) Potri.007G139000 [exp] 87 / 6e-18 AT2G20635 681 / 0.0 ATP binding;protein kinases;protein serine/threonine kinases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08311 [flax] [poplar] Mad3_BUB1_I Mad3/BUB1 homology region 1
Representative CDS sequence Show only first row Show all	>Lus10040947 pacid=23179744 polypeptide=Lus10040947 locus=Lus10040947.g ID=Lus10040947.BGIv1.0 annot-version=v1.0 ATGGCCGCCGCCGGAGAAGATCTCTTCTCATCCGTCGTCTCCGACATTAAATCCTACCCTGGCAAGGATCCTTTGCTTCCTTGGCTCCGGGGCATAAAAA AATTGACCGAGCTTCTGCCTCCAAATCTTCTGAAAGCAAAGCTACCTCGATTTTTGCAAAAATGCGCTCAGACATTCGAGTCGGATAAGCGCTACAGGAA CGATCCTCGCTACCTTCGTGTTTGGTTGCAGCTGATGGACTATGTGGATGAACCAAGAGTGCTATTGAGAACCATGGAGAAGAATTACATTGGGATGAAG AGGTCACTCTTTTACCAGGCGTATGCTTTGTATTATGAGAAGATGAAGAAATTTGAGGATGCTGAGAAGATGTACCATTTGGGTGTGCAGAATCTCGCTG AGCCTGTTGATGAGTTGCGGAGATCATATGAGCAGTTCCTCCATCGAATGAAAAGACACATGAACAAGAAAACCCAGACCCTGAGAAGTGACAGAAGACA CCCGCCACTTGAGAAGACTGAAGAAAACAATGAGATTGCATGTGGGAGCTCCCGAAATGTGAAGCCCTTGATGGAATTAAACTTAGTTTCTAAAGTGAAA TGTGTGGAAAATGCAGAGGATACAAAGGAGGCCTTGGGAAGATCTGCTGTTAGCAGACTGAAGGAAAACCATAGCTCAAATGATGGTTTTGAAATTTTTG TAGATGAAAACATGGAGGGAGTAAACAACTCATTGGAGAAAGCTCAAGCTAGCCAGACCAGCAAGAAGCCTCTTCAGATATTTATTGATGATGAAGAATC TGAAGAGAATGAGAAAGACAGCATAGATCAGAATGAGGCTGAGGTTGGTGCATTTGTGTTCCCATGTCCAAAGGATGTATCATCTGAAGACGGAAATGAT AGTATGGATGGCCAGAGGCCACCACAAAATAAACTTATTAGGGAGGATACAGTTGTTCACCGATTTGTTGGATCCACCATCTTGGATGAACCAGCGGTGG AGAATGTTTGTCACCATGGGTTAGTTGATCCCACAGTCAACTTGAAGGAGGCCATGGAAGACATCAACAACATGTTTGGGAAGCCAATAGATTTTGTTAG AGCCAGGAGAGCAAAGCAGCAGGGTAAAAAACAAGCACTTGGTGGGTTTTCTATACTGCCTGATAATGATTTGGATCATAGACAAAGTCAGACAACCAAA GAACAAGAAGTCAGTGCATTCTCTATACTACCTGATGAAGAGTTTGACCTTCAAGAAAGCCATCCAGCAAAGAGACAAGAACTCGGGGGATTCTTGATAC TGCCTGATGATGATGATGATGATGATGATGATGATGATCTTGATCATAAACAAAGCCAACAAGGGAAGAAGCAAGAACTCAGTGGGTTCTCGATACTTCC CGACGATGACCTCAATCATAAACAAAAAAGGAAGCAGCCACATAAATCTTCATCCGATGCAAGAGGATCAGACTTGTTCGAGCCAACTGTGTTCACAAAA GAGGCAATGGATGACATCAACAAGTTGTTTGGCATGCCATTGGACTTTTAG
AA sequence Show only first row Show all	>Lus10040947 pacid=23179744 polypeptide=Lus10040947 locus=Lus10040947.g ID=Lus10040947.BGIv1.0 annot-version=v1.0 MAAAGEDLFSSVVSDIKSYPGKDPLLPWLRGIKKLTELLPPNLLKAKLPRFLQKCAQTFESDKRYRNDPRYLRVWLQLMDYVDEPRVLLRTMEKNYIGMK RSLFYQAYALYYEKMKKFEDAEKMYHLGVQNLAEPVDELRRSYEQFLHRMKRHMNKKTQTLRSDRRHPPLEKTEENNEIACGSSRNVKPLMELNLVSKVK CVENAEDTKEALGRSAVSRLKENHSSNDGFEIFVDENMEGVNNSLEKAQASQTSKKPLQIFIDDEESEENEKDSIDQNEAEVGAFVFPCPKDVSSEDGND SMDGQRPPQNKLIREDTVVHRFVGSTILDEPAVENVCHHGLVDPTVNLKEAMEDINNMFGKPIDFVRARRAKQQGKKQALGGFSILPDNDLDHRQSQTTK EQEVSAFSILPDEEFDLQESHPAKRQELGGFLILPDDDDDDDDDDDLDHKQSQQGKKQELSGFSILPDDDLNHKQKRKQPHKSSSDARGSDLFEPTVFTK EAMDDINKLFGMPLDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10040947 [exp]	0	1
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10013199 [exp]	2.0	0.9616
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	5.1	0.9527
AT1G76540		CDKB2;1	cyclin-dependent kinase B2;1 (...		Lus10040593 [exp]	5.5	0.9425
AT3G12870			unknown protein		Lus10031776 [exp]	6.7	0.9429
AT5G37010			unknown protein		Lus10020782 [exp]	7.1	0.9343
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	7.7	0.9402
AT3G60660			unknown protein		Lus10010359 [exp]	8.7	0.9174
AT4G33270		AtCDC20.1, CDC2...	cell division cycle 20.1, Tran...		Lus10006851 [exp]	9.4	0.9426
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Lus10019439 [exp]	10.2	0.9309
AT4G14310			Transducin/WD40 repeat-like su...		Lus10021166 [exp]	10.5	0.8776

Compare expression of checked genes

Lus10040947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.