Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58530 163 / 9e-50 Glutaredoxin family protein (.1) AT5G13810 144 / 1e-42 Glutaredoxin family protein (.1) AT2G41330 144 / 3e-41 Glutaredoxin family protein (.1) AT3G57070 140 / 2e-39 Glutaredoxin family protein (.1) AT5G39865 127 / 6e-35 Glutaredoxin family protein (.1) AT3G28850 121 / 3e-32 Glutaredoxin family protein (.1) AT5G06470 115 / 2e-31 Glutaredoxin family protein (.1) AT3G11773 107 / 9e-30 Thioredoxin superfamily protein (.1.2) AT1G64500 107 / 9e-28 Glutaredoxin family protein (.1) AT5G01420 106 / 5e-27 Glutaredoxin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007517 [exp] 264 / 6e-90 AT5G58530 153 / 1e-45 Glutaredoxin family protein (.1) Lus10009838 [exp] 268 / 1e-86 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10017438 [exp] 218 / 6e-72 AT5G58530 132 / 1e-37 Glutaredoxin family protein (.1) Lus10039537 [exp] 144 / 4e-42 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10024164 [exp] 143 / 8e-42 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10001669 [exp] 135 / 1e-38 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10013597 [exp] 127 / 1e-36 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1) Lus10021255 [exp] 125 / 7e-36 AT5G06470 185 / 7e-59 Glutaredoxin family protein (.1) Lus10017335 [exp] 125 / 2e-34 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G072200 [exp] 228 / 6e-76 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1) Potri.009G075600 [exp] 189 / 3e-60 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.001G280400 [exp] 180 / 8e-57 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 152 / 4e-44 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 147 / 9e-44 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.006G041800 [exp] 149 / 7e-43 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 141 / 2e-41 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 141 / 2e-41 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 122 / 7e-34 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1) Potri.016G067700 [exp] 122 / 8e-34 AT5G06470 206 / 4e-66 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10040949 pacid=23179932 polypeptide=Lus10040949 locus=Lus10040949.g ID=Lus10040949.BGIv1.0 annot-version=v1.0 ATGGGCGGCGGTAGCGGCAGCACCAGCATCGGCTCTTCCCCTCCTTCTATTTCTCCTCGCTCCGCTTCCATCTTCCACCGCGTCCGGATCTCTAACTCCA TACTTCGCTACCTCCGCAAATCTCTCCCATCGCAGCCACATCTTCAGCACCAGCAGCCGGACTGCATCGTCCTCTACTTCACCAGCCTCCGCGTGGTGCG GCGGACCTTCGAAGACTGCCGCACTGTCAGATCCATCCTCCGGGGGTTCCGCGTCCCGATAGACGAGCGTGATTTGTCAATGGACGGTAAGTACTTGGGA GAGGTGCAGGAGATCGTCGGGTCAAGTGGTAAGGTAACGCTGCCGTTGGTCTTAATCGGAGGTAAGTCCTTCGTTGGAGCGGACGAAATCAGGGAGCTGC ACGAGTGCGGAGAGCTGAAGAAGATGATCGGGGGGTTGCCGGTTGTTGGAGCGTCAAACGAATGCGAAGCGTGTGGAGGAATGCGATTTGTGATGTGCGA AGAGTGCAGCGGAAGCCACAAGATCTTCTCGGAAAAGCAAGGGTTCCGGAGTTGCACCACCTGCAATGTCAATGGTTTGGTCCGCTGCCCGGAATGTTAC CCGGCTGGCCGACGGCAGATGTCAATCGCATAA
AA sequence Show only first row Show all	>Lus10040949 pacid=23179932 polypeptide=Lus10040949 locus=Lus10040949.g ID=Lus10040949.BGIv1.0 annot-version=v1.0 MGGGSGSTSIGSSPPSISPRSASIFHRVRISNSILRYLRKSLPSQPHLQHQQPDCIVLYFTSLRVVRRTFEDCRTVRSILRGFRVPIDERDLSMDGKYLG EVQEIVGSSGKVTLPLVLIGGKSFVGADEIRELHECGELKKMIGGLPVVGASNECEACGGMRFVMCEECSGSHKIFSEKQGFRSCTTCNVNGLVRCPECY PAGRRQMSIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58530			Glutaredoxin family protein (....		Lus10040949 [exp]	0	1
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10038283 [exp]	6.0	0.8082
AT2G43090			Aconitase/3-isopropylmalate de...		Lus10007488 [exp]	6.0	0.8274
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Lus10013364 [exp]	6.5	0.8295
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10022922 [exp]	12.0	0.7767
AT1G15230			unknown protein		Lus10035871 [exp]	13.0	0.7712
AT1G44414			unknown protein		Lus10018166 [exp]	15.5	0.7988
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009041 [exp]	17.9	0.7645
AT3G62580			Late embryogenesis abundant pr...		Lus10010016 [exp]	18.7	0.7762
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10001970 [exp]	25.5	0.7622
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10004109 [exp]	26.0	0.7943

Compare expression of checked genes

Lus10040949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.