Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40280 727 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 682 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G34300 598 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G29470 595 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G64030 587 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G51070 584 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 481 / 4e-162 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G77260 468 / 4e-158 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 467 / 3e-157 Putative methyltransferase family protein (.1) AT2G39750 466 / 6e-157 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017436 [exp] 948 / 0 AT2G40280 739 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10007520 [exp] 940 / 0 AT2G40280 734 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029736 [exp] 587 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10042767 [exp] 586 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10018954 [exp] 582 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 575 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 567 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10019644 [exp] 553 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 551 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G185000 [exp] 770 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G075800 [exp] 593 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G184500 [exp] 585 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 580 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G104000 [exp] 573 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G065200 [exp] 573 / 0 AT5G64030 1078 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 571 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 480 / 1e-162 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 462 / 9e-156 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 457 / 7e-153 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03141 [flax] [poplar] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10040950 pacid=23179783 polypeptide=Lus10040950 locus=Lus10040950.g ID=Lus10040950.BGIv1.0 annot-version=v1.0 ATGTCGCTAGCCAGGCTGATGAAGGAACGCACATTCGGGATCGCATTCTTCATCTTCATCTTCGCCTTCCTAGTCTCCATAACCTTCTTCTTCCTCTCCA GCGGCAACACCGCCGACCTCCCTTACTACTTCTCCCTCTCCGCCCGCTCTGATGATCATGTTGTCCAGTCCACCTCCCAGGCCGCCACCACGACTATCTC TCCCAAGGACTCCCCGGCTCTCAAGGCCAGGAAGGCCAATTTCCCCACCGTGGGGCCCATCGACATGACGTGGCGCCTCTGCGAAGGGGTCTTGGCGGTG GATTACATCCCCTGTTTGGATAATTACCAGCAGATTAAGCGGCTCCCTTCCAGGCGTCGCATGGAGCACAGAGAGAGGCATTGTCCTAAGCCAGCCCCCG CCAGGTGTTTGATTCCTCTCCCCGCCCGATACAAACTCCCTCTCCCTTGGCCTCAAAGCAGACAAATGATATGGTACGACAATGTTCCTCACCCAAAGCT AGTGGAGTACAAGAAAGACCAGAATTGGGTGCGTAAGGAAGGTGATCATTTCATTTTCCCTGGGGGTGGCACTCAGTTCCCTTATGGAGTCTCCAACTAC ACCACCTTCATTCAGGAGACTGTGCCAATGATCCATTGGGGAAGACACATCAGAGTGGCTCTAGATGTAGGCTGTGGCGTGGCTAGCTTTGGCGGATATC TGCTAGACAAACAAGTACTTACCATGTCCATGGCTCCTAAAGATGAACATGAAGCTCAGATACAATTCGCTCTTGAGAGAGGCATTCCTGCTTTCCTCTC TGTCATTGGAACCCAGCAGCTGGTGTTTCCTGATAATGCTTTTGATCTCATTCATTGCGCACGTTGCAGAGTTCATTGGGACATCGACGGTGGGAAACCG CTGCTTGAGCTGAACAGGGTTCTGAGGCCAGGAGGGTTCTTTGTATGGTCAGCCACACCTGTGTACCGTGATGATGAAGCTGACGTAAAAGACTGGAAAT CAATGGTAGCTTTGACAGAATCCATCTGTTGGAAGGTTGTGGCCAAGACAATGGATGATTCAACAGGGATTGGACTTGTAATCTATCAGAAACCAGATTC TCCTTCTTGCTACGAGAAACGCCCCCAAAATGATCCTCCTCTTTGTGATCAGAACGCTCAACACAATGTTTCATGGTACAAACCTCTACGAAGCTGCATT TCCAGGCTCCCGCTTGATGAAGAAGGTAACGCCATGAGCTGGCCCGTAACATGGCCATATAGGCTTAACAGTCTCCCAGTTTCCCTGCCGTCCAAACCTG GCATGGTGGAACAGTACGAGGAAGAAAACAAACGATGGGATGAGCTCGTATCCGATACTTATCTCATGAAACTTAACGTCAACTGGACTGGTATTCGAAA TATAATGGATATGAACGCTGGTTATGGAGGATTTGCTGCGGCGCTCTCTGATCTCCCTTACTGGGTGATGAATGTGGTCCCAGTTCATGAGCAAGACACA CTACCAATCATCTACGACAGAGGATTGATTGGTGTATACCACGACTGGTGCGAGTCGTTCAATACTTACCCTCGAACCTATGATCTTCTACATTCCAGCT TCCTTTTCAAGAGACTGTCAGAGAGATGTGAGCTGATAGATGTGGTGGTAGAGATTGATCGGATAGTAAGACCGGGAGGGTATCTTCTTGTGTTTGACAC CATGGAGATGATCAACAAGCTCACTGCTATATTGAAGTCGCTTCATTGGTCAATTAAAGTGTATCAAGTTCAGTACTTGGTTGCCACCAAAGATTTCTGG CGCTCCACCGATTGA
AA sequence Show only first row Show all	>Lus10040950 pacid=23179783 polypeptide=Lus10040950 locus=Lus10040950.g ID=Lus10040950.BGIv1.0 annot-version=v1.0 MSLARLMKERTFGIAFFIFIFAFLVSITFFFLSSGNTADLPYYFSLSARSDDHVVQSTSQAATTTISPKDSPALKARKANFPTVGPIDMTWRLCEGVLAV DYIPCLDNYQQIKRLPSRRRMEHRERHCPKPAPARCLIPLPARYKLPLPWPQSRQMIWYDNVPHPKLVEYKKDQNWVRKEGDHFIFPGGGTQFPYGVSNY TTFIQETVPMIHWGRHIRVALDVGCGVASFGGYLLDKQVLTMSMAPKDEHEAQIQFALERGIPAFLSVIGTQQLVFPDNAFDLIHCARCRVHWDIDGGKP LLELNRVLRPGGFFVWSATPVYRDDEADVKDWKSMVALTESICWKVVAKTMDDSTGIGLVIYQKPDSPSCYEKRPQNDPPLCDQNAQHNVSWYKPLRSCI SRLPLDEEGNAMSWPVTWPYRLNSLPVSLPSKPGMVEQYEEENKRWDELVSDTYLMKLNVNWTGIRNIMDMNAGYGGFAAALSDLPYWVMNVVPVHEQDT LPIIYDRGLIGVYHDWCESFNTYPRTYDLLHSSFLFKRLSERCELIDVVVEIDRIVRPGGYLLVFDTMEMINKLTAILKSLHWSIKVYQVQYLVATKDFW RSTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40280			S-adenosyl-L-methionine-depend...		Lus10040950 [exp]	0	1
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	12.0	0.7749
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10026662 [exp]	12.5	0.7966
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10009385 [exp]	13.5	0.7993
AT3G23760			unknown protein		Lus10043212 [exp]	14.5	0.8146
AT4G22130		SRF8	STRUBBELIG-receptor family 8 (...		Lus10015549 [exp]	14.9	0.7628
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Lus10033597 [exp]	15.0	0.7853
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10013423 [exp]	16.2	0.7785
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020579 [exp]	17.3	0.8063
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10017640 [exp]	18.2	0.7801
AT5G01020			Protein kinase superfamily pro...		Lus10037165 [exp]	20.9	0.7617

Compare expression of checked genes

Lus10040950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.