Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09870 618 / 0 histidine acid phosphatase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G072600 [exp] 672 / 0 AT1G09870 684 / 0.0 histidine acid phosphatase family protein (.1) Potri.010G184600 [exp] 662 / 0 AT1G09870 660 / 0.0 histidine acid phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0071 [flax] [poplar] His_phosphatase PF00328 [flax] [poplar] His_Phos_2 Histidine phosphatase superfamily (branch 2)
Representative CDS sequence Show only first row Show all	>Lus10040951 pacid=23179564 polypeptide=Lus10040951 locus=Lus10040951.g ID=Lus10040951.BGIv1.0 annot-version=v1.0 ATGGAGAATACAGCCATGTGTACGGCGTTGTGGATGCTTCCGTTGCTACTGATGCTTCCGCATTTCAATGATGCTAGTGGAGAAGGCTTCGACGTTCGCC AGCACCTCTCCACTGTATCTAGATATGATGCTGTTAAAGATATCGTCATCAACAGCTCGTTTGTTCCGTCCAATGCCATTGATGGCTGCACTCCGATTCA CTTGAACCTTGTGGCAAGGCATGGGACTCGTTCCCCAACCAAGAAACGAATGAGAGAGCTAGACAGGTTGGCTTCTCATCTAAAAGAGCTTCTAAGCAAG GCTAAAGAACAGAAATCGTCCATGAAGAATGTTCCTGCCTGGATGCTGAGTTGGGAGTCCCCATGGAAAGGTAAATTGAAAGGTGGAGAGCTGATTAGCC AAGGAGAAGAGGAGTTGTATGGTATTGGAATCAGGACTAGGGAAAGGTTTTCAGACTTGTTCAAAGAGCCATACCACCCTGACGTGTATGTGATAAAGGC AACACAGGTTGCTCGGGCATCAGCTAGTGCTGTGGCATTTGGTATGGGACTATTAAGCGGGAAAGGGAATATTGGACCAGGGAAACACAGAGCTTTTGCC GTTACCAGCGAAAATCGTGCTAGTGATTTAATGCTTAGGTTCTTTGATAGTTGTCAAAGCTACAAGGTTTACAGGAAAAACAAGGAGCCTGATGTTGATA AACTGAAGGAACCTGTCTTAGATAAAATAACATCTGCCTTAGTCAGCCGTTTCGGTTTAAGTTTCACTCGTCAGGATACAGCTTCTCTTTGGTTTCTTTG CAAACAGGAAGCTTCCCTGCTGGATATTACAGGTCAAGCTTGTGGTCTTTTCAACCCTTCTGAGGTTGAATTGTTGGAGTGGACAGACGACTTGGAGGTG TTCCTGCTGAAGGGTTATGGCAATTCAATAAATTACCGGATGGGACTTCCGTTGCTTGAGGACATTGTACAATCAATGGAGCAAGCTATAAAGGCACATG AAGAAAAACATGCTCCTGGGAGTTATGAAAAGGCAAGATTGAGATTTGCACATGCAGAGACCGTGGTTCCCTTTTCATGTCTGCTTGGGCTTTTCCTTGG AGGGTCCGAATTCGAAAAGATACAAAAGGAGCTACCTCTAGATCTTCCTCCCATGCCTCCAATGGATAGGAAAACCCGAGGTAGTGCTGTGGCACCTTTT GCTGGGAATAATATGCTAGTCCTCCACAGTTGCCCAGCATCCTCTTCTAGCAAGTACTACATCCAAGTCCTCCACAATGAGCGTCCCATTCCAATGCCAG GTTGTGGTGGATCTGACGTTTGTCCATTTGAAGTGTTTAAGGAAAGAATAGTTAACCCTCATCTAAAGCACGACTACAATGCGCTCTGTGCTGTACCAGA ACCAATAAAGGAGAAGACTCTAACCAGTAAGTTGCTACTTCCGTTCAATTGGATGTCCTGGGGAAGAGCTACAGAGCCCAAACTTGAATTGTAG
AA sequence Show only first row Show all	>Lus10040951 pacid=23179564 polypeptide=Lus10040951 locus=Lus10040951.g ID=Lus10040951.BGIv1.0 annot-version=v1.0 MENTAMCTALWMLPLLLMLPHFNDASGEGFDVRQHLSTVSRYDAVKDIVINSSFVPSNAIDGCTPIHLNLVARHGTRSPTKKRMRELDRLASHLKELLSK AKEQKSSMKNVPAWMLSWESPWKGKLKGGELISQGEEELYGIGIRTRERFSDLFKEPYHPDVYVIKATQVARASASAVAFGMGLLSGKGNIGPGKHRAFA VTSENRASDLMLRFFDSCQSYKVYRKNKEPDVDKLKEPVLDKITSALVSRFGLSFTRQDTASLWFLCKQEASLLDITGQACGLFNPSEVELLEWTDDLEV FLLKGYGNSINYRMGLPLLEDIVQSMEQAIKAHEEKHAPGSYEKARLRFAHAETVVPFSCLLGLFLGGSEFEKIQKELPLDLPPMPPMDRKTRGSAVAPF AGNNMLVLHSCPASSSSKYYIQVLHNERPIPMPGCGGSDVCPFEVFKERIVNPHLKHDYNALCAVPEPIKEKTLTSKLLLPFNWMSWGRATEPKLEL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09870			histidine acid phosphatase fam...		Lus10040951 [exp]	0	1
AT5G59160		PPO, TOPP2	PROTOPORPHYRINOGEN OXIDASE, ty...		Lus10040742 [exp]	2.8	0.8633
AT3G07140			GPI transamidase component Gpi...		Lus10025918 [exp]	3.3	0.8911
AT5G18950			Tetratricopeptide repeat (TPR)...		Lus10024666 [exp]	6.2	0.8303
AT1G71110			unknown protein		Lus10034641 [exp]	8.6	0.8052
AT5G15280			Pentatricopeptide repeat (PPR)...		Lus10033008 [exp]	9.5	0.8353
AT1G78060			Glycosyl hydrolase family prot...		Lus10007775 [exp]	9.6	0.8616
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Lus10001851 [exp]	15.1	0.8445
AT3G61580		AtSLD1	sphingoid LCB desaturase 1, Fa...		Lus10031102 [exp]	15.5	0.8483
AT3G55060			unknown protein		Lus10030304 [exp]	16.4	0.8451
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10019285 [exp]	19.0	0.8238

Compare expression of checked genes

Lus10040951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.