Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71370 587 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT1G71280 464 / 2e-160 DEA(D/H)-box RNA helicase family protein (.1) AT5G05450 447 / 7e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G18600 215 / 1e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 201 / 7e-57 DEA(D/H)-box RNA helicase family protein (.1) AT1G77030 169 / 9e-45 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) AT4G16630 161 / 3e-42 DEA(D/H)-box RNA helicase family protein (.1) AT5G54910 154 / 7e-40 DEA(D/H)-box RNA helicase family protein (.1) AT3G09620 144 / 4e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G06480 142 / 8e-36 DEAD box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009838 [exp] 785 / 0 AT5G05450 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10027240 [exp] 211 / 6e-61 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038950 [exp] 210 / 2e-60 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 209 / 4e-60 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10007574 [exp] 199 / 4e-55 AT5G54910 862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10012172 [exp] 195 / 1e-53 AT5G54910 865 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10012633 [exp] 168 / 1e-45 AT5G08610 719 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10008989 [exp] 161 / 1e-43 AT3G18600 508 / 2e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018941 [exp] 158 / 4e-41 AT1G77030 1043 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073100 [exp] 772 / 0 AT5G05450 837 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 211 / 7e-61 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 199 / 8e-57 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G423300 [exp] 201 / 3e-56 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G185900 [exp] 151 / 6e-39 AT1G77030 1106 / 0.0 hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides;ATP-dependent helicases;nucleic acid binding;ATP binding;RNA binding;helicases (.1) Potri.006G249100 [exp] 145 / 3e-38 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.016G013900 [exp] 145 / 4e-38 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.003G124100 [exp] 142 / 7e-36 AT1G63250 883 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G169800 [exp] 139 / 8e-35 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G241300 [exp] 139 / 1e-34 AT4G16630 829 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10040952 pacid=23179817 polypeptide=Lus10040952 locus=Lus10040952.g ID=Lus10040952.BGIv1.0 annot-version=v1.0 ATGGAAGACTCCCATAACTCAAACAGAGCGTTAACCAGCACCCGCTTCTCCGACCTAAATCCACCGCTCTCCCTTCCGGTTCTCGATGCCCTTTCAGAAG GCGGCTTCGATTACTGCACGCCTGTTCAAGCTGCGACCATTCCTTTATTATGCAGCTACAAGGACGTCGCCGTCGACGCTGCCACCGGTTCCGGCAAAAC CCTGGCTTTCGTTGTTCCTCTCGTCGAGATTCTCCGCCGAACTTCCCCTGCTCCCAAACCTCACCATGTGATGGGGATAATCATATCTCCTACTAGGGAG CTGTCGTCCCAAATATATAATGTTGCACAACCTTTCATCGCTACCTTATCGAATTTTAAGCCTATCCTCCTTGTTGGAGGTAGGGATGTGAAGGCTGATG TGAAGACAATAGAAGAAGAAGGGGCTAATTTATTGATTGGGACGCCTGGTAGGCTGCATGATATAATGGAACGCGTTGATGACTTGGATTTTCGGAATCT TGAGGTCTTGATTCTAGATGAGGCTGATAGACTGTTGGATATGGGATTCCAGAAGCAGTTAAACGCCATCATATCCCGTTTGCCAAAGCTTCGTAGGACC GGTCTTTTCTCAGCTACTCAGACTGAGGCAGTTGAAGAGTTGGCCAAAGCTGGACTAAGGAATCCTGTAAGGGTTGAAGTTCGAGCTGAAGAGAAGGCAT TAAATGATTCATCTTCATCTCAGCATTCAGCTTCTTCCAAGACGCCATCTGGACTTGTCCTTGAGTATTTGGAGTGTGAAGCGGATAAAAAACCATCAGA ACTTGTGGATCTTCTTGTTAAGAATAAGTCGAAGAAGATTATAATATACTATATGACTTGCGCCTGCGTGGATTACTGGGGAGTCGTTCTTATGCAGTAT GATCCCCCACAAGATCCCGATGTATTCATCCACAGAGTCGGTCGAACTGCCCGTTTGGGCAGACAAGGATATGGCATTGTTTTTCTCTTACCCAAGGAGG AAGCTTATGTAAGATTTCTTCAGAATAGAAGGGTTCCTCTCCAAGAAAGGGAACCTACCGATGATGCTGTAGATGTTGTGTCTGAGATACGGTCTGCAGC AACAAAGGATCGTGATGTCATGGAAAAGGGTCTGACAGCGTTTGTTTCTTTTATCCGTGCATATAAGGAGCATCGTTGTGAATATATTTTCAGGGTGAAA GAACTCGAGATTGGGAAATTGGGCATGGGATTTGGCCTATTGCAGCTTCCTTCAATGCCTGAAGTAAAGCACTGCTCTCGCTCCATGGAGGGGTTCATTC CTGTTGAAGATCTCAACTTGGAGGAGATAAAATTTAAGGACAAATCTCGACAGAAGCAAAGGAACAAGAATCTGCAGAGTAAGAAAGAAGCTAAGAAGCA TGAAGAGAAACCCCAGAGGAAAAAGAAGAACCCGGATGAAGCAATGAGGAAGAAAACTGCAAAGCAGAGGCGTGCTACCCAGACAGCGGAAGACGATGAG GAGCTAACTCGTGACTACCGTTTGCTTAAAAAACTGAAGAAGGGAGATATCGGTGAAGATGAATTTGCCAAGTTAACGGGAATGGAAGATTTAATTTGA
AA sequence Show only first row Show all	>Lus10040952 pacid=23179817 polypeptide=Lus10040952 locus=Lus10040952.g ID=Lus10040952.BGIv1.0 annot-version=v1.0 MEDSHNSNRALTSTRFSDLNPPLSLPVLDALSEGGFDYCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLVEILRRTSPAPKPHHVMGIIISPTRE LSSQIYNVAQPFIATLSNFKPILLVGGRDVKADVKTIEEEGANLLIGTPGRLHDIMERVDDLDFRNLEVLILDEADRLLDMGFQKQLNAIISRLPKLRRT GLFSATQTEAVEELAKAGLRNPVRVEVRAEEKALNDSSSSQHSASSKTPSGLVLEYLECEADKKPSELVDLLVKNKSKKIIIYYMTCACVDYWGVVLMQY DPPQDPDVFIHRVGRTARLGRQGYGIVFLLPKEEAYVRFLQNRRVPLQEREPTDDAVDVVSEIRSAATKDRDVMEKGLTAFVSFIRAYKEHRCEYIFRVK ELEIGKLGMGFGLLQLPSMPEVKHCSRSMEGFIPVEDLNLEEIKFKDKSRQKQRNKNLQSKKEAKKHEEKPQRKKKNPDEAMRKKTAKQRRATQTAEDDE ELTRDYRLLKKLKKGDIGEDEFAKLTGMEDLI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05450			P-loop containing nucleoside t...		Lus10040952 [exp]	0	1
AT5G53340			Galactosyltransferase family p...		Lus10033935 [exp]	1.7	0.9664
AT5G55950			Nucleotide/sugar transporter f...		Lus10016648 [exp]	2.2	0.9427
					Lus10040842 [exp]	3.5	0.9656
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Lus10023737 [exp]	4.2	0.9472
AT5G53340			Galactosyltransferase family p...		Lus10032350 [exp]	6.8	0.9140
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10021800 [exp]	7.2	0.9200
AT1G79620			Leucine-rich repeat protein ki...		Lus10023849 [exp]	9.2	0.9386
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Lus10036578 [exp]	11.0	0.9155
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Lus10025431 [exp]	11.7	0.9051
AT5G60720			Protein of unknown function, D...		Lus10021450 [exp]	12.8	0.9437

Compare expression of checked genes

Lus10040952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.