Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40320 670 / 0 TBL33 TRICHOME BIREFRINGENCE-LIKE 33 (.1) AT3G11030 569 / 0 TBL32 TRICHOME BIREFRINGENCE-LIKE 32 (.1) AT2G38320 368 / 6e-125 TBL34 TRICHOME BIREFRINGENCE-LIKE 34 (.1) AT5G01360 367 / 3e-124 TBL3 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT3G55990 364 / 2e-122 TBL29, ESK1 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) AT5G01620 362 / 7e-122 TBL35 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) AT2G40150 355 / 1e-119 TBL28 TRICHOME BIREFRINGENCE-LIKE 28 (.1) AT1G73140 353 / 4e-119 TBL31 Plant protein of unknown function (DUF828) (.1) AT2G40160 309 / 2e-101 TBL30 Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT1G78710 241 / 4e-76 TBL42 TRICHOME BIREFRINGENCE-LIKE 42 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009839 [exp] 808 / 0 AT2G40320 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10017428 [exp] 558 / 0 AT2G40320 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Lus10027813 [exp] 370 / 1e-125 AT5G01360 570 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10007497 [exp] 369 / 1e-124 AT3G55990 681 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10028974 [exp] 365 / 8e-123 AT3G55990 678 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10022676 [exp] 362 / 2e-122 AT2G38320 545 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Lus10005042 [exp] 362 / 4e-122 AT5G01360 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10030396 [exp] 353 / 3e-118 AT3G55990 684 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Lus10007528 [exp] 346 / 7e-118 AT2G40320 357 / 7e-123 TRICHOME BIREFRINGENCE-LIKE 33 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073300 [exp] 682 / 0 AT2G40320 694 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.010G184000 [exp] 663 / 0 AT2G40320 692 / 0.0 TRICHOME BIREFRINGENCE-LIKE 33 (.1) Potri.016G119100 [exp] 376 / 1e-127 AT5G01360 578 / 0.0 TRICHOME BIREFRINGENCE-LIKE 3, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Potri.016G125500 [exp] 366 / 4e-124 AT2G38320 541 / 0.0 TRICHOME BIREFRINGENCE-LIKE 34 (.1) Potri.010G187600 [exp] 367 / 2e-123 AT3G55990 660 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G069900 [exp] 363 / 8e-122 AT3G55990 686 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.016G125600 [exp] 360 / 3e-121 AT5G01620 657 / 0.0 TRICHOME BIREFRINGENCE-LIKE 35 (.1.2.3) Potri.001G376700 [exp] 353 / 7e-119 AT1G73140 640 / 0.0 Plant protein of unknown function (DUF828) (.1) Potri.010G187500 [exp] 353 / 9e-119 AT3G55990 560 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1) Potri.008G070000 [exp] 341 / 7e-114 AT3G55990 530 / 0.0 TRICHOME BIREFRINGENCE-LIKE 29, ESKIMO 1, Plant protein of unknown function (DUF828) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Lus10040953 pacid=23179887 polypeptide=Lus10040953 locus=Lus10040953.g ID=Lus10040953.BGIv1.0 annot-version=v1.0 ATGAAGACCCCAAAATCTCCATCTTCATCTCCTCTTTCTTCAACAACTACTACTTCATCTGTTTATTCTCTCAGGAAGGCTCGGGGATTATCTCCGCTGC TCTTCACCTTCCTGGCGCTCATCGTCTTCGTCGTAACCCTCTACGGTGAAGATTTCGTGTGCCTCCTCGGCCAATTCGATCCCTATTATTATTCTCTGAG CTTATCATCATCATCACCCGCCAGTACGGTGCCGGATCATCATCAGCCTGCTGCCTTTGCTATTGGGAGGAGCCCTGAAGGGTGCAATTTGTTCAGTGGG AGGTGGGTGAGGGACGAGTCGAGTCGCCCTCTTTACGAGGAATGGGAGTGTCCGTACATCCAGCCCCAGCTTACCTGTCAGAAACAAGGCCGCCCTGATC AGGATTACCTGTTCTGGAGATGGCAACCCCATGCCTGTGATCTCCCCAGCTTCAACGCAACGCGGATGTTGGAGACGTTGCGAGGGAAGCGGATGATGTA CGTGGGGGACTCCCTAAACCGAGGCCAGTTCGTGTCGATGGTGTGTCTCCTCCACCGCCTCATCCCGAACGAGTCAGCCAAGTCCATGAAGACCTACGAC TCCCTCACCGTCTTCACCGCCAAGGACTACAACGCCACCGTTGAGTTCTACTGGGCACCCTTCCTTCTCGAGTCCAACTCCGACAATGCCATCGTCCACC GTATATCTGACAGGATCGTGAGGCGAGGATCCATCAACAAGCACGGCCGCCACTGGAAGGGGGTGGACATTGTCGTGTTCAACACATACCTGTGGTGGAT GACGGGGCTTAAGATGAAGGTGCTACAAGGATCGTTCCAGGACGAGAACAAGGAGATCGTGGAGGTGTCGACGGAGGATGCGTACAGGATGGGTATGAGG AGTATGTTGAGGTGGGCTAGGAAGAACATGGATCCTACCAAGACCAGGGTTTTCTTCACCAGCATGTCCCCTACCCACGGCAAGAGCGTGGATTGGGGAG GGGAGCCCGGGCAGAATTGCTATAACGAGACGAAGATGATCGACAACGCCACCTACTGGGGATCCGACAGCCGACGGAGCATAATGCGAGTGATTGGAGT GGAGTTGGGGAAATCCAAATATCCGGTGACGTTCCTCAACATAACCCAGATGTCTAACTACAGGAAAGATGCCCACACTTCCATCTACAAGAAGCAATGG AATGCATTGACAGAGGAGCAGCTTGCCAACCCAGGTACCTACGCCGATTGTGTTCACTGGTGTTTGCCTGGACTTCAGGATACATGGAATGAACTTCTTT TTGCCAAACTCTTCTATCCTTGA
AA sequence Show only first row Show all	>Lus10040953 pacid=23179887 polypeptide=Lus10040953 locus=Lus10040953.g ID=Lus10040953.BGIv1.0 annot-version=v1.0 MKTPKSPSSSPLSSTTTTSSVYSLRKARGLSPLLFTFLALIVFVVTLYGEDFVCLLGQFDPYYYSLSLSSSSPASTVPDHHQPAAFAIGRSPEGCNLFSG RWVRDESSRPLYEEWECPYIQPQLTCQKQGRPDQDYLFWRWQPHACDLPSFNATRMLETLRGKRMMYVGDSLNRGQFVSMVCLLHRLIPNESAKSMKTYD SLTVFTAKDYNATVEFYWAPFLLESNSDNAIVHRISDRIVRRGSINKHGRHWKGVDIVVFNTYLWWMTGLKMKVLQGSFQDENKEIVEVSTEDAYRMGMR SMLRWARKNMDPTKTRVFFTSMSPTHGKSVDWGGEPGQNCYNETKMIDNATYWGSDSRRSIMRVIGVELGKSKYPVTFLNITQMSNYRKDAHTSIYKKQW NALTEEQLANPGTYADCVHWCLPGLQDTWNELLFAKLFYP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10040953 [exp]	0	1
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Lus10008226 [exp]	1.0	0.9850
AT3G25290			Auxin-responsive family protei...		Lus10025877 [exp]	1.7	0.9808
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Lus10034515 [exp]	2.4	0.9786
AT5G61840		GUT1, IRX10-L	Exostosin family protein (.1)		Lus10032530 [exp]	3.0	0.9774
					Lus10011724 [exp]	3.2	0.9824
AT2G41610			unknown protein		Lus10030172 [exp]	4.5	0.9799
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10019325 [exp]	4.5	0.9788
AT1G13900			Purple acid phosphatases super...		Lus10004661 [exp]	4.6	0.9696
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10026654 [exp]	4.7	0.9692
AT2G40320		TBL33	TRICHOME BIREFRINGENCE-LIKE 33...		Lus10009839 [exp]	6.3	0.9749

Compare expression of checked genes

Lus10040953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.