Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10040954 pacid=23180008 polypeptide=Lus10040954 locus=Lus10040954.g ID=Lus10040954.BGIv1.0 annot-version=v1.0 ATGAGCAAATCTGGCTGGAAAAGGCTTGGGAGCAAGGCCAGTAAGATCAGCAATAACTACAAGCTTTTTGGATTGCTTCTTCCCTCTGAATTGGACCTCG GGCTTCAGACTCAATTGGGGGACTCCACGAAGGGAATTCGCCGAAACTCCACCCTTTGCTTGTTTCGAATTATTATGCTAGGGGTCAGGGAAGGCAGAGA AACTGGCTGTGGAGTAGTCAATGGGGAAGGGAAGCTCTGGAGCGCCAGAGAATCGACGGTGATGGCTAGGGAGTTCCCCAAATGTGGAGAGGTCGTCTTA AGCGGTGGGAAGGATTGTGGAAGCTTCTTCTTGGGAGAAGGGACGACAGGAGATGCAGAATTACTTCTGCCTACGACCTTGGGTTGGATCGGGGGAGATT TTGTTCCAGATGGGCTTGCTGAATCCACTTCCATTTGGCTAAACTTAGAAATCCGGCCCAAGTCTACACCTTTGAGCTTAGTCGACTGCAGAGATGCCTT GGAAGTTCTTATAACAATCTTCTCAGCCTGA
AA sequence Show only first row Show all	>Lus10040954 pacid=23180008 polypeptide=Lus10040954 locus=Lus10040954.g ID=Lus10040954.BGIv1.0 annot-version=v1.0 MSKSGWKRLGSKASKISNNYKLFGLLLPSELDLGLQTQLGDSTKGIRRNSTLCLFRIIMLGVREGRETGCGVVNGEGKLWSARESTVMAREFPKCGEVVL SGGKDCGSFFLGEGTTGDAELLLPTTLGWIGGDFVPDGLAESTSIWLNLEIRPKSTPLSLVDCRDALEVLITIFSA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10040954 [exp]	0	1
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029112 [exp]	3.2	0.9405
AT4G10970			unknown protein		Lus10023075 [exp]	3.5	0.9423
AT1G68940			Armadillo/beta-catenin-like re...		Lus10029113 [exp]	3.5	0.9337
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10025280 [exp]	4.2	0.9261
AT5G57500			Galactosyltransferase family p...		Lus10000372 [exp]	5.9	0.9314
AT3G28630			Protein of unknown function (D...		Lus10015346 [exp]	6.3	0.9144
AT4G18830	OFP	ATOFP5, OFP5	ovate family protein 5 (.1)		Lus10015236 [exp]	7.1	0.8979
AT3G16230			Predicted eukaryotic LigT (.1....		Lus10006828 [exp]	7.9	0.9259
					Lus10007750 [exp]	9.1	0.9019
AT4G23050			PAS domain-containing protein ...		Lus10017844 [exp]	9.5	0.9194

Compare expression of checked genes

Lus10040954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.