Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42670 1083 / 0 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT5G20420 1075 / 0 CHR42 chromatin remodeling 42 (.1) AT1G05490 327 / 2e-92 CHR31 chromatin remodeling 31 (.1) AT3G24340 320 / 4e-91 CHR40 chromatin remodeling 40 (.1) AT2G21450 274 / 2e-77 CHR34 chromatin remodeling 34 (.1) AT2G16390 260 / 3e-72 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT1G08600 114 / 2e-25 ATRX, CHR20 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) AT5G63950 106 / 5e-23 CHR24 chromatin remodeling 24 (.1) AT5G44800 92 / 2e-18 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT3G19210 87 / 5e-17 ATRAD54, CHR25 homolog of RAD54 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009840 [exp] 2202 / 0 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10003003 [exp] 320 / 3e-91 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10011033 [exp] 322 / 7e-91 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10042070 [exp] 291 / 2e-81 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10041963 [exp] 284 / 6e-80 AT2G16390 1018 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10017973 [exp] 262 / 2e-72 AT2G16390 994 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10040136 [exp] 251 / 6e-69 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10001090 [exp] 110 / 3e-26 AT1G05490 202 / 6e-59 chromatin remodeling 31 (.1) Lus10032785 [exp] 104 / 4e-22 AT1G08600 1252 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G073500 [exp] 1167 / 0 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.010G183832 [exp] 674 / 0 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.014G050200 [exp] 372 / 6e-109 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.009G120700 [exp] 281 / 2e-79 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183766 [exp] 211 / 3e-62 AT5G20420 176 / 9e-51 chromatin remodeling 42 (.1) Potri.010G183799 [exp] 192 / 2e-54 AT5G20420 154 / 6e-42 chromatin remodeling 42 (.1) Potri.004G159000 [exp] 202 / 3e-53 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.013G048500 [exp] 110 / 4e-24 AT1G08600 1603 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4) Potri.005G066600 [exp] 107 / 2e-23 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.019G021500 [exp] 105 / 2e-22 AT1G08600 1612 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10040956 pacid=23179626 polypeptide=Lus10040956 locus=Lus10040956.g ID=Lus10040956.BGIv1.0 annot-version=v1.0 ATGTCGACAACGAAGAGAAGGCGCGTGCATGAGTCCAGGCATGGATTCCATGATACCCCATTTGAGGCCTTCTGTTGTGGATCGTGGCGAGGTGTGAGGA AAATAGAAATTAGGGCTGGGGCTATGATCACACATTATGGAGATCACCATCACCTTGGAGTTGCACAGAAAGGTCCATTGCCAAATCTTCGAGTAAGGTC AAGGCAAGCAACTGTATCTGATTGCATTTGTTTCCTAAGGCCTGGCATTGATGTCAATGTGCTTTCATCAGCTCTACTACATGGAGATAAGCCAAAGACT AAAGATCCTGTGTGGGTAGATGGTAAAATAAAATCGATAGCGAGGAAGCCACATGATGGCTCTCATTGTTCATGCAAGTTTTCTGTTAAACTCTATGCAA ACCAAGGAGTTATTGGAATGGAGAAAGCAACACTTAGCAGAATAACTGATGAAGTAGGAATTGACAAGATCTATGTTCTTCAAAAGCTTGATAATAGTCC TTGCCAAGGCCGATTCTATCGCTGGGAATATTCGGAAGATTGTGTTGTAGCACAAAGAACTAAATTATTTCTGGGGAAGTTCTGTCATGAGCTGACGTGG CAACTTGCAACATCAGTTCTCAAGCACATTGCTTTTGTTGTAAGGTCACTACAAAACAAGATCATATATCAAATTTGGGCTTATGATGAGGCTGACAACA CCTCCAAAACTGATATGCAACTGAATTGTATTAATTTCAAGGTCGAGAACGACATTTTGACACCAGTTCTTAAACAATACAGTCTTGATGATTCTACTAA TGAAGCAGTTGTTACTTCTTCTGAACTAGTTGTTGTTAATCCTCCTGAGCCAGCTACTGAAGAATCAAACTTGAAACTGCGGAGGTCTGGACGTAGAAGG GTTCAGCCAGATCGCTTCATTGGAGGTGACAACATTTCTGCAGATGAGGACCCTGGTTGGGTTAGACAGATGCCATACAAGACAAATAGATGGAAGGAGG ACAATGATGATGATGATGATGATGATGATGACATGGATGTGCCGCTTTCAAATCTTTTTCGAAAAAACCAAGCTCGGGGAGAGTTCCGTAATTTTGAGCC CATAGAGGGGAATGATGATGGTGAGACTGGGACTTCAAAGCCAAGAAGAGGGCGAGGGCGTAAGCGTAAGCTTGCTATAGTGTCTGTGCCTGATGCTGAA AATGAACCAAAAGAATCCGGAAAACTGGATCCTCCTCCTCCTCCTCCTCCTCCAAAGTCTACTGAGAATCATCCCAGAGACAAGGATGACGTGTCATTTG GGTATTACAGCGAGCGAGGTACTTCTGGTTCACAAAGGAAGAGTTTTGTTTCTTTCAGCACAAGGAATCCTAGTTTTGAGCCTGAGGAAGACTTTGGGTT TCAAAGTGGATGGGGCTCAAAATCTTTTGGTAGGAAATATTCTTCAAATGTAAGATACAGATCTTTCAGACCCAGGAAAGATAATAAGTTTGGTGAACAA AGGACATTCAAGAAGACAGCTTTAAGTGCTGGTGCATACAACAAGCTTATAAATTCATACATGAAGAACATTGATTCAACCATCTCGTCCAAAAGTGAGA CACATATCATTGACCAATGGGAGCGATTTAAAGCCAAAGGCAACGAGAGGCAGACTCAAAAAACTGACCAGTTTGAAGAAGAGGATGATGGAGAGCTGTC GGAAACCGAGATGTTATGGAGAGAAATGGAGCTTTGCTTGGCATCAGCATATATCCTTGAAGAAGATCAGAATCGAGCTTCCAAAAAGAACGTGGAAAAC GAGGAAGTGAACAACAACTGCCTCCATGCATACAAACTGGACGAGGAAATTGGGATTATATGTACGATATGTGGCTTCGTGAAGACCGAAATGAAATATG TTACACCTCCATTCGTGGAAACGGAATATGGTAGCTCGAATCCAGAACGGAAGCCTAACGATGGAGATGACTCAGAGGTTAAGGCAGATGGGGATGAGGA AATAAAATTGTTCACAACTGATCACAATACCTACAATGAAGAAGCAGCATTCTCAGCTGATCAGGAAAACGTATGGGCTTTAGTCCCACATATTAAAAGC AAGCTGCATTTGCACCAGAAGAAGGCATTTGAGTTTCTATGGAAGAACACTGCTGGCTCAATGATCCCAGCAGAAATGGTGAAAGCATCAAAGAAAATTG GTGGTTGTGTCGTCTCCCATACTCCGGGAGCCGGTAAAACTTTCCTCATCATTGCATTCCTCTCTAGCTTCCTCAGGTTATTCCCAAACAAGAGGCCATT AGTCCTTGCTCCGAAGACTACTCTCTACACTTGGTACAAGGAATTTATCAAGTGGGAGATTCCCATCCCGGTTCACCTTATCCATGGGCGCAAGACTTAT AGGCTTTCGAAGCAAGGCACTGTGAAATATGGAGGGGGAGGAGGACCGAAGCCGAGTCAGGATGTTATGCATATCCTTGACTGCTTAGAAAAGATTCAAA AGTGGCATGCTCAGCCAAGTGTTCTTGTCATGGGCTACACTTCTTTCCTGACATTGATGCGCGAAGATTCGAAATTTGCTCACAGGCAGTACATGGCTAA AGTGTTGAGGGAAAGTCCAGGGCTCCTCATTTTGGATGAAGGGCATAACCCAAGAAGTACAAAATCCAGGTTGAGAAAGGTGTTGATGAAGGCCGATACA GATCTCCGAATACTTCTATCCGGAACTTTATTCCAGAACAATTTCGTCGAGTATTTCAACACACTTTGCCTTGCTAGGCCAAAGTTCATTAGAGAAGTCT TGAAGAAGCTAGACCCCAAGTTCAAGGCAAAGAGAGGGCTTCAAAAGGCTCGACATCTACTCGAAGCTAGAGCCAGGAAACTTTTCATAGATAAAATTGC AAGCAAGATCGATTCAGATGTGCCAGAAGAAAGAATGGAGGGTCTGAATGTGCTGAGGAAAATGACCAATGGCTTTATAGATGTGTATGAAGGTGGAGCT TCTGATGGCCTTCCGGGTTTGCAGATTTATACTATATTGATGAATTCGACTGATATACAAAACGAGATTCTGAACAAACTTCATGACATTATGGCCACAT ACCCTGGATACCCACTGGAGCTGGAGCTTATGATTACACTTGCCTCTATTCACCCATGGTTAGTTAAAACATCAAACTGTGTCCATAAATTCTTCAACCT CCCGGAACAGCTGGAGCTTGAGAAGCTCAAGTTTGATTTCAAGAAAGGCTCAAAGGTCATGTTTGTTCTGAACTTAGTGTACAGAATAGTCAAGAAGGAG AAAGCTCTCATCTTTTGCCATAATATCGCGCCCATTACCCTCCTGACCGAGCTGTTCGAGAATATATTCGGATGGCAGAAGGGCAGAGAGATTATGATAC TCACAGGTGATCTTGAGCTTTTTGAAAGAGGGAGGATAATAGATAAGTTTGAGGAGCCAGGTGGCCACTCTAAGGTTCTACTCGCATCAATCACAGCTTG TGCTGAGGGAATCAGCCTTACAGCAGCTTCAAGAGTCATCCTAATGGACTCTGAGTGGAATCCTTCGAAGACGAAACAGGCCATTGCTCGGGCTTTTCGT CCAGGCCAGCAGAAGGTGGTATATGTGTATCAACTCCTCGCGACTGGTACGCTCGAGGAAGATAAGTACAGGAGAACAACATGGAAAGAGTGGGTTTCTT GTATGATTTTCAGTGAGGCTTTCGTTGAGGACCCTTCGCAGTGGCAAGCGGAGAAGATCGAAGATGACGTTCTGAGGGAAATGGTGGAGGAGGATCGTGT CAAATCGTTTCATATGATCATGAAGAACGAAAAGGCTTCAACGGGTTAA
AA sequence Show only first row Show all	>Lus10040956 pacid=23179626 polypeptide=Lus10040956 locus=Lus10040956.g ID=Lus10040956.BGIv1.0 annot-version=v1.0 MSTTKRRRVHESRHGFHDTPFEAFCCGSWRGVRKIEIRAGAMITHYGDHHHLGVAQKGPLPNLRVRSRQATVSDCICFLRPGIDVNVLSSALLHGDKPKT KDPVWVDGKIKSIARKPHDGSHCSCKFSVKLYANQGVIGMEKATLSRITDEVGIDKIYVLQKLDNSPCQGRFYRWEYSEDCVVAQRTKLFLGKFCHELTW QLATSVLKHIAFVVRSLQNKIIYQIWAYDEADNTSKTDMQLNCINFKVENDILTPVLKQYSLDDSTNEAVVTSSELVVVNPPEPATEESNLKLRRSGRRR VQPDRFIGGDNISADEDPGWVRQMPYKTNRWKEDNDDDDDDDDDMDVPLSNLFRKNQARGEFRNFEPIEGNDDGETGTSKPRRGRGRKRKLAIVSVPDAE NEPKESGKLDPPPPPPPPKSTENHPRDKDDVSFGYYSERGTSGSQRKSFVSFSTRNPSFEPEEDFGFQSGWGSKSFGRKYSSNVRYRSFRPRKDNKFGEQ RTFKKTALSAGAYNKLINSYMKNIDSTISSKSETHIIDQWERFKAKGNERQTQKTDQFEEEDDGELSETEMLWREMELCLASAYILEEDQNRASKKNVEN EEVNNNCLHAYKLDEEIGIICTICGFVKTEMKYVTPPFVETEYGSSNPERKPNDGDDSEVKADGDEEIKLFTTDHNTYNEEAAFSADQENVWALVPHIKS KLHLHQKKAFEFLWKNTAGSMIPAEMVKASKKIGGCVVSHTPGAGKTFLIIAFLSSFLRLFPNKRPLVLAPKTTLYTWYKEFIKWEIPIPVHLIHGRKTY RLSKQGTVKYGGGGGPKPSQDVMHILDCLEKIQKWHAQPSVLVMGYTSFLTLMREDSKFAHRQYMAKVLRESPGLLILDEGHNPRSTKSRLRKVLMKADT DLRILLSGTLFQNNFVEYFNTLCLARPKFIREVLKKLDPKFKAKRGLQKARHLLEARARKLFIDKIASKIDSDVPEERMEGLNVLRKMTNGFIDVYEGGA SDGLPGLQIYTILMNSTDIQNEILNKLHDIMATYPGYPLELELMITLASIHPWLVKTSNCVHKFFNLPEQLELEKLKFDFKKGSKVMFVLNLVYRIVKKE KALIFCHNIAPITLLTELFENIFGWQKGREIMILTGDLELFERGRIIDKFEEPGGHSKVLLASITACAEGISLTAASRVILMDSEWNPSKTKQAIARAFR PGQQKVVYVYQLLATGTLEEDKYRRTTWKEWVSCMIFSEAFVEDPSQWQAEKIEDDVLREMVEEDRVKSFHMIMKNEKASTG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10040956 [exp]	0	1
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	2.0	0.9349
AT2G42200	SBP	SPL9, AtSPL9	squamosa promoter binding prot...		Lus10023818 [exp]	2.4	0.9348
AT1G28390			Protein kinase superfamily pro...		Lus10018542 [exp]	3.6	0.9116
AT5G20420		CHR42	chromatin remodeling 42 (.1)		Lus10009840 [exp]	4.6	0.8985
					Lus10039387 [exp]	4.9	0.9182
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011585 [exp]	6.0	0.9145
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10018459 [exp]	6.5	0.9176
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10020382 [exp]	7.1	0.8751
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	7.5	0.9175
AT2G19090			Protein of unknown function (D...		Lus10020008 [exp]	7.6	0.8923

Compare expression of checked genes

Lus10040956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.