Plant FIBer expression Database

Lus10040959 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G56130 233 / 6e-75 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
AT3G15690 125 / 1e-33 Single hybrid motif superfamily protein (.1.2)
AT1G52670 125 / 3e-33 Single hybrid motif superfamily protein (.1)
AT5G16390 42 / 0.0004 CAC1-A, BCCP-1, CAC1A, BCCP1, CAC1 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
AT5G15530 40 / 0.001 BCCP2, CAC1-B biotin carboxyl carrier protein 2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009843
[exp]
382 / 1e-133 AT3G56130 242 / 1e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Lus10017424
[exp]
253 / 8e-83 AT3G56130 240 / 4e-79 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Lus10010226
[exp]
251 / 4e-82 AT3G56130 238 / 4e-78 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Lus10011480
[exp]
138 / 2e-38 AT1G52670 189 / 3e-59 Single hybrid motif superfamily protein (.1)
Lus10023118
[exp]
131 / 1e-35 AT3G15690 192 / 2e-60 Single hybrid motif superfamily protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G074100
[exp]
245 / 5e-80 AT3G56130 229 / 1e-74 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Potri.010G183200
[exp]
241 / 3e-78 AT3G56130 222 / 6e-72 biotin/lipoyl attachment domain-containing protein (.1.2.3.4)
Potri.001G172600
[exp]
129 / 7e-35 AT3G15690 249 / 9e-83 Single hybrid motif superfamily protein (.1.2)
Potri.003G061400
[exp]
125 / 3e-33 AT3G15690 244 / 6e-80 Single hybrid motif superfamily protein (.1.2)
Potri.017G092500
[exp]
41 / 0.001 AT5G16390 191 / 1e-59 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0105 Hybrid PF00364 Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence
>Lus10040959 pacid=23179784 polypeptide=Lus10040959 locus=Lus10040959.g ID=Lus10040959.BGIv1.0 annot-version=v1.0
ATGGACTCCTCCGTCTCCCTCCGCTCCTTCCGCTGTCCTGTACCTACGATTTCAAGCCCTCAGTCACTAGCTGAAAGGACTTGTGTATTTTCTCTCCAGA
GTCGTAGCTTCGGCGGGAAGCTTGTTTACTCGCCGGCTAAGAGGAATCTGTCCATAGTATCCTACGCCAAGACATCTGATTCCTCTATAGCTTCCAAGTC
TGCTGGTCAGTTTTTTGCGTTTCTGTCGTATTCGATTGGTTTTCTATTGGTATTAGATTTTGATGAATTCTTTGATCCGTTGAGCCGATCAGCTAGCTTC
GACTCAATTGTTGTGGTGTTGCATATACTTAGTTACGTGACTGCATTTTTACTGGGGTTCTCCTTGCTTATGGTGCTGCAAGTCAACAGTTTTGGTTTTG
TGACTGGATGTCCTGATTATGCTTTTACTTTAGCAGATAATGTCACGCCAGTTGAATCAGAGAATAATGATCAACCACGGGGAACTTTTCCTAGTGGGCT
TGAAGCTCTGTTACTGGAAGTCTGTGACGAAACTGAAGTTGCAGAGCTAAAACTAAAGGTTGGTGACTTCGAAATGCATCTGAGGCGTGACGTAGGAGCT
ACAACAGCCCCCTTGTCCAATATGTCACCATCAATGGCACCACCTATTCCATCTGAACCAATGAATGTCGCAGCTCCTGCTATGACATCAGCATCAGCCC
CACCACCTCCACCACAATCTTCTGCAAAGAAGTCCGATCCATTCATCAATGTCTCCTTTGGAAAGTCACCGAAGTTGGCTGCCCTGGAAGCTTCTGGAAC
TACTGGCTACGTTCTCGTGGCTTCTCCAATAGTTGGGTCATACCGGAAGACTCGTACAGTGAAAAAAGGAAAGCCACAGCCTCGTTTCTGCAAAGAGGGT
GATATGATTAAAGAAGGACAGGTGATTGCATATTTGGATCAGTTTGGCACTGAACTTCCTGTGAGGTCGGATGTTGCTGGAGAAGTACTAAAGATCTTCT
TCGAGGAAGGAGATGCTGTTGGATACAAAGATCCTCTTATGGCTGTGTTGCCTTCATTTCCGGGCATCCAGGTTCAGTAA
AA sequence
>Lus10040959 pacid=23179784 polypeptide=Lus10040959 locus=Lus10040959.g ID=Lus10040959.BGIv1.0 annot-version=v1.0
MDSSVSLRSFRCPVPTISSPQSLAERTCVFSLQSRSFGGKLVYSPAKRNLSIVSYAKTSDSSIASKSAGQFFAFLSYSIGFLLVLDFDEFFDPLSRSASF
DSIVVVLHILSYVTAFLLGFSLLMVLQVNSFGFVTGCPDYAFTLADNVTPVESENNDQPRGTFPSGLEALLLEVCDETEVAELKLKVGDFEMHLRRDVGA
TTAPLSNMSPSMAPPIPSEPMNVAAPAMTSASAPPPPPQSSAKKSDPFINVSFGKSPKLAALEASGTTGYVLVASPIVGSYRKTRTVKKGKPQPRFCKEG
DMIKEGQVIAYLDQFGTELPVRSDVAGEVLKIFFEEGDAVGYKDPLMAVLPSFPGIQVQ

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G56130 biotin/lipoyl attachment domai... Lus10040959
[exp]
0 1
AT3G56130 biotin/lipoyl attachment domai... Lus10009843
[exp]
1.0 0.9778
AT1G53240 mMDH1 mitochondrial malate dehydroge... Lus10013680
[exp]
1.4 0.9759
AT2G30200 EMB3147 EMBRYO DEFECTIVE 3147, catalyt... Lus10042255
[exp]
2.4 0.9752
AT5G67500 VDAC2, ATVDAC2 ARABIDOPSIS THALIANA VOLTAGE D... Lus10007739
[exp]
2.8 0.9700
AT5G38830 Cysteinyl-tRNA synthetase, cla... Lus10034343
[exp]
3.0 0.9618
AT1G11680 EMB1738, CYP51A... embryo defective 1738, CYTOCHR... Lus10004146
[exp]
3.5 0.9666
AT5G16390 CAC1-A, BCCP-1,... BIOTIN CARBOXYL-CARRIER PROTEI... Lus10004868
[exp]
4.6 0.9632
Lus10011622
[exp]
5.5 0.9615
AT5G60640 ATPDI2, ATPDIL1... ARABIDOPSIS THALIANA PROTEIN D... Lus10037403
[exp]
5.9 0.9679
AT2G16595 Translocon-associated protein ... Lus10007577
[exp]
6.0 0.9540

Lus10040959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.