Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56140 879 / 0 Protein of unknown function (DUF399 and DUF3411) (.1) AT2G40400 872 / 0 Protein of unknown function (DUF399 and DUF3411) (.1), Protein of unknown function (DUF399 and DUF3411) (.2) AT5G12470 190 / 1e-53 Protein of unknown function (DUF3411) (.1) AT5G22790 116 / 1e-27 RER1 reticulata-related 1 (.1) AT2G37860 116 / 2e-27 LCD1 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) AT3G08630 99 / 3e-22 Protein of unknown function (DUF3411) (.1) AT3G08640 98 / 5e-22 Protein of unknown function (DUF3411) (.1) AT5G24690 96 / 1e-20 Protein of unknown function (DUF3411) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009845 [exp] 1390 / 0 AT3G56140 879 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10010224 [exp] 1082 / 0 AT3G56140 909 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10017422 [exp] 310 / 2e-99 AT3G56140 290 / 3e-92 Protein of unknown function (DUF399 and DUF3411) (.1) Lus10019744 [exp] 192 / 1e-54 AT5G12470 452 / 1e-159 Protein of unknown function (DUF3411) (.1) Lus10009956 [exp] 191 / 5e-54 AT5G12470 459 / 8e-162 Protein of unknown function (DUF3411) (.1) Lus10003180 [exp] 191 / 5e-54 AT5G12470 457 / 6e-161 Protein of unknown function (DUF3411) (.1) Lus10016379 [exp] 191 / 7e-54 AT5G12470 451 / 1e-158 Protein of unknown function (DUF3411) (.1) Lus10003242 [exp] 103 / 4e-23 AT3G08640 372 / 6e-127 Protein of unknown function (DUF3411) (.1) Lus10024346 [exp] 93 / 9e-21 AT2G37860 415 / 7e-146 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074300 [exp] 961 / 0 AT3G56140 968 / 0.0 Protein of unknown function (DUF399 and DUF3411) (.1) Potri.001G262200 [exp] 200 / 2e-57 AT5G12470 471 / 1e-166 Protein of unknown function (DUF3411) (.1) Potri.001G256300 [exp] 199 / 1e-56 AT5G12470 443 / 3e-155 Protein of unknown function (DUF3411) (.1) Potri.009G051800 [exp] 194 / 4e-55 AT5G12470 467 / 1e-164 Protein of unknown function (DUF3411) (.1) Potri.009G150400 [exp] 116 / 2e-27 AT5G22790 518 / 0.0 reticulata-related 1 (.1) Potri.016G103100 [exp] 115 / 4e-27 AT2G37860 510 / 2e-180 LOWER CELL DENSITY 1, Protein of unknown function (DUF3411) (.1), Protein of unknown function (DUF3411) (.2), Protein of unknown function (DUF3411) (.3) Potri.006G111300 [exp] 102 / 3e-23 AT3G08640 349 / 8e-120 Protein of unknown function (DUF3411) (.1) Potri.016G140700 [exp] 99 / 3e-22 AT3G08640 357 / 5e-123 Protein of unknown function (DUF3411) (.1) Potri.001G210500 [exp] 96 / 3e-20 AT5G24690 602 / 0.0 Protein of unknown function (DUF3411) (.1) Potri.003G019600 [exp] 95 / 4e-20 AT5G24690 599 / 0.0 Protein of unknown function (DUF3411) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11891 [flax] [poplar] RETICULATA-like Protein RETICULATA-related CL0572 [flax] [poplar] TIKI PF04187 [flax] [poplar] Cofac_haem_bdg Haem-binding uptake, Tiki superfamily, ChaN
Representative CDS sequence Show only first row Show all	>Lus10040960 pacid=23180020 polypeptide=Lus10040960 locus=Lus10040960.g ID=Lus10040960.BGIv1.0 annot-version=v1.0 ATGACGCACCACCACATCCACCACCACCGCCACTTCTTCACCTCTTCCGCTCCGCATCCTCCGCCACAACTCCTCCATCAATTCACCACCGAAGCACATC GCCGCCTCCGCTACCACCCCTTGTCTTTCTCTATCCATGCTGCTCTAGAATCTCATAGCAAATCTGAAGAATGCGGCCCAAGTCAAACCAGCACTACCAC CATTGGTGGTACGAAGAGGAGGCAATTCTTCATCGCTCCGATCCTAACTCTCGGTGCTTCAGTCCTCCACTCTGCCGTCTCAAGGGCGGATGAAATTATT CCCCAACCGCTGTCTCCTTCTCCTCCTCCTCCTCCTCCTCTTCCGTCTCTGGAGGTCCAACCTTCAACGCCGACGGAAGCGGCGAAGAATGCGGAGGAGC TGATGCCAATCAATTCAAGAATTTACGATGCCACTGCGATTGGAGAGCCACTGGCTCTTGGGAAGGAAAAGAGTGCTAAAGCGTTGGAGAGGCTGACGAA CGCGAGGATTGTGTATTTAGGCGAGGCGGAGCAAGTTCCGACGCTGGACGACAAGACTTTGGAGCTCGAAATTGTGAAGATCTTGAGGACACGATGCGTT GACAACCAGAGGCTCATTTCCCTAGCAATGCAGGCGTTTCATTGTGAACTGCAGCCAATGCTCGACGATTATCTGGACAAAAGGATAGACGAAGAAGCTT TCAAGGCTCTTCTATGGAATTGGCCACCTGAGCGGTGGCAAGAGTATGAGCCTCTCCTTAGTTATTGCCGGGATAATGGAGTTAGAATTGTTGCTTGTGG TGTCCCTCCTAAGGTCCTGAGGAATGTCCAAGCTGAGGGGCTTCAAGGACTTTCAAAGCCTGACCGCAAGCTGTATACTCCTCCAGCAGGTTCAGGGTTC AGTTCAGGATTCACCTACATCTCTCGCAGGCTAAATGATTTGAGTACTGAAAACCTATCTATTGCTAGTGGCCCAAGCTCATACTTGTCTGCACAAGCAA GGGTAGTGGAGGATTACAGCATGTCTCGAATCATTTTGCAATCAGTGGCAGATGAAGGAGCTTCTGGGCTGCTGGTTGTGATAACAGGAGCAAGCCATGT CACTTATGGGTCGAGGGGAACTGGGCTGCCTGCAAGAATATCAAAGAAGTTGCAAAAGAGGAACCAAGTTGTCATACTGCTGAATCCTGAAAGACAACTC ATCCGGAGAGAAGGAGAAGTTCCTGTTTCGGACTTCTTATGGTATTCTGCTGCCAAGCCCTGCACCAGGAATTGCTTCGATCGTGCAGAAATCGCTAGAG TAATGAATGCAGCTGGTAGGAGGAAAGATGCACTACCACAGGATCTTCAAAAGGGTCTCGATCAAGGTTTAGTATCACCTGAGGTGCTACAAAATTTCTT TGACTTGGAGCAATATCCTCTTATTAAGGAACTAACTGATCGTTTTCAGGGTTTCAGAGAGAGGTTATTGGCAGATCCAAAATTCTTGCATAGGTTAGCC ATAGAAGAATCAATTTCAATCACTGCTAATATTGTAGCACAATACGAGAAACGCAAGGAGAATTTCTTTGAAGAGCTAGACTATGTAATCACAGACACCG TCAGGGGAATTGTTGTTGATTTTTTCACAGTATGGCTTCCTGCTCCAACTATCACCTTCCTTTCATACAACGATCAGTCGAATTCACCTGACAGTATCAA TGCCTTACAAGGCCTTCTTGGGTCCATTCCGGATAATGCATTTCAAAAGAATCTTGTTGGAAAAGACTGGAATTTGAGTCACAGAGTTGCATCTGTTTTA TTTGGTGGTCTTAAGCTTTCTGGTGTAGGATTTGTTTCCAGCATTGCAGCTGTAACTTCCTCAAACGCCATACTTTCAGTTCGCAAACTCATGAATCCAG AGTTGGTTATTGACCAACGGATTAAAAGACCCCCAATACTGAAAACAGCAGTTGTTTACGCAAGTTTCCTTGGCATATCAGCGAATCTTCGATACCAGAT TATTGCCGGGGTAATCGAACACAGGATTTCTGATGAATTCGCTTCACAAACAATACTTGTAGGAATGCTATCATTCATTGCCCGGACGATAAACTCCTAC TGGGGAACCCAGCAATGGATCGATCTTGCACGCTTTTCGGGACTACAAAGTAGTAAGAATAATGAACAGGTATCTTCTGAGATTGTGGATCCAATTGTGG GATGCAAAAGCCCAGAAGAAGCAGGAACTAGCGAAATTAAGAACTAA
AA sequence Show only first row Show all	>Lus10040960 pacid=23180020 polypeptide=Lus10040960 locus=Lus10040960.g ID=Lus10040960.BGIv1.0 annot-version=v1.0 MTHHHIHHHRHFFTSSAPHPPPQLLHQFTTEAHRRLRYHPLSFSIHAALESHSKSEECGPSQTSTTTIGGTKRRQFFIAPILTLGASVLHSAVSRADEII PQPLSPSPPPPPPLPSLEVQPSTPTEAAKNAEELMPINSRIYDATAIGEPLALGKEKSAKALERLTNARIVYLGEAEQVPTLDDKTLELEIVKILRTRCV DNQRLISLAMQAFHCELQPMLDDYLDKRIDEEAFKALLWNWPPERWQEYEPLLSYCRDNGVRIVACGVPPKVLRNVQAEGLQGLSKPDRKLYTPPAGSGF SSGFTYISRRLNDLSTENLSIASGPSSYLSAQARVVEDYSMSRIILQSVADEGASGLLVVITGASHVTYGSRGTGLPARISKKLQKRNQVVILLNPERQL IRREGEVPVSDFLWYSAAKPCTRNCFDRAEIARVMNAAGRRKDALPQDLQKGLDQGLVSPEVLQNFFDLEQYPLIKELTDRFQGFRERLLADPKFLHRLA IEESISITANIVAQYEKRKENFFEELDYVITDTVRGIVVDFFTVWLPAPTITFLSYNDQSNSPDSINALQGLLGSIPDNAFQKNLVGKDWNLSHRVASVL FGGLKLSGVGFVSSIAAVTSSNAILSVRKLMNPELVIDQRIKRPPILKTAVVYASFLGISANLRYQIIAGVIEHRISDEFASQTILVGMLSFIARTINSY WGTQQWIDLARFSGLQSSKNNEQVSSEIVDPIVGCKSPEEAGTSEIKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56140			Protein of unknown function (D...		Lus10040960 [exp]	0	1
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10039915 [exp]	2.6	0.7642
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Lus10037870 [exp]	4.8	0.8271
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	5.5	0.7644
AT5G24260			prolyl oligopeptidase family p...		Lus10022408 [exp]	7.7	0.7662
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10009165 [exp]	9.4	0.7491
AT4G10120		ATSPS4F	Sucrose-phosphate synthase fam...		Lus10041041 [exp]	10.4	0.7465
AT3G57610		ADSS, ATPURA	adenylosuccinate synthase (.1)		Lus10042358 [exp]	11.2	0.7756
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021976 [exp]	13.0	0.7397
AT1G02850		BGLU11	beta glucosidase 11 (.1.2.3.4....		Lus10007871 [exp]	13.3	0.7279
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022483 [exp]	13.5	0.7760

Compare expression of checked genes

Lus10040960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.