Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22900 255 / 6e-77 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44900 244 / 5e-73 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT1G08140 231 / 4e-68 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT2G28180 229 / 6e-67 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT2G13620 221 / 4e-64 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT3G44920 220 / 5e-64 ATCHX11 cation/H+ exchanger 11, cation/H+ exchanger 11 (.1) AT1G08135 214 / 7e-62 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1) AT1G05580 208 / 6e-60 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT3G44930 207 / 1e-59 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT5G22910 199 / 2e-56 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000161 [exp] 704 / 0 AT5G22900 320 / 6e-99 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10000154 [exp] 654 / 0 AT5G22900 216 / 2e-63 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10013423 [exp] 472 / 5e-160 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10040963 [exp] 467 / 2e-157 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10043128 [exp] 223 / 8e-65 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 216 / 2e-62 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10035312 [exp] 215 / 7e-62 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 211 / 3e-60 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10037374 [exp] 202 / 2e-57 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182900 [exp] 465 / 5e-158 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G099000 [exp] 444 / 1e-149 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G171200 [exp] 416 / 1e-138 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 232 / 1e-68 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G183000 [exp] 230 / 1e-67 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.006G176400 [exp] 224 / 1e-65 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G105200 [exp] 216 / 3e-62 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.006G176800 [exp] 213 / 3e-62 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.019G123800 [exp] 214 / 5e-62 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 210 / 2e-60 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [flax] [poplar] HUP PF00582 [flax] [poplar] Usp Universal stress protein family
Representative CDS sequence Show only first row Show all	>Lus10040961 pacid=23179962 polypeptide=Lus10040961 locus=Lus10040961.g ID=Lus10040961.BGIv1.0 annot-version=v1.0 ATGATTACTCCAAACTTCTTCCCTTTAGGATTTACCTTGCTTGGTTATTTCTTGAAGTTGACCTTCACGTTCTTAATGGGACTCAGTTTTAAGCTATCTG CTAAATATTGTGCAGCTTACACACTCATTGTCAATGCTAAAGGTGTTCTTGAAGTTGGCGTCTTCCTCAGCTTTGGTAACCTTGCGAAGAGACAATTGGA GACTACCTATGCTATTTTCTTGGTGTTTTTTCTGTCAAGTATTGCCCCACCAATCATAAGGCTTCTCTACGATCCTACAAAACAGTACATTGGTTACAAG AGGAAGTGCATTCAGTATGCTCCTGACAATGCTCCTCTCCACATCTTGGCTTGTGCACACAAACAGGATGATGCAGTAGCAGTCCTCAAGCTGCTGGAGT TTTCGAATCCCACTAAACAAAGTCCCTTAGTAGTATTGGGGCTATGCTTGGAAGAGCTTGTAAGCAGCTTCACCCCTCTTCTAATCAACCATCAATTAGG GCAGAAAGTTTCTTCCTCCAAAGGATCAAAATCGCAGCACATCCTCGACGTATTCAACTACTTCGCGCCGCAGTTCAAAAAACTGGCACAGGTCAACGCC TTCACCGCAATCTCCCACCTCAAACAAATGCATGAGGACATCTGCTGGCTCGCATTCAACAAGGCTGTTCCGTTGATCGTGCTTCCGTTTCATAACAAGT GGAACCACAAAGGCCAACTGATTCATAGCACTGAAGACCTCAGGAGCTTGAACATCAATGTCTTGAATAGGGCTCCTTGCTCCGTTGGGATCTTGGTCGA TCGCCGGAGGGCTCTCGGACTTTCATCCATCTTCGTGACTTCGGCAGTTTATCGTGTGGTGCTTTTGTTCGTGGGAGGGTCCGATGACCGGGAGGCGCTG GCATTTGCATTGAGGATGGCTGGTAGTCCCAGGGTACAGCTGACTATAGTTCAGTTCATGGTGGGTGAGGAGAATGTAGTGGATCGTTGGGAGGCGATGC TTGATGCAGAGGCGATCAGAATCATGAGGCAAGAGGTGTATGTTAATGGTAATGTGAAGTTTGTGGAAAAACACGTAAGAGATGGATCAGATACGTCAAC GATAGTGAGGCAAATGGAGACGAATTTGGTCCTGGTAATAGTGGGGAGGAGGCATGATACGAACTGTCAAGCTCTGTCAGGACTTGCAGAGTGGCTGGAT GTGCCGAAATTAGGTCCACTCGGAGACATATTAGCATCTCAAGATGTTACTGCTGCAACTTCAGTCCTTGTGGTTCAGCAACAGATCATGAAAGCAAGTC ACAGCAACATCTTGAACTAG
AA sequence Show only first row Show all	>Lus10040961 pacid=23179962 polypeptide=Lus10040961 locus=Lus10040961.g ID=Lus10040961.BGIv1.0 annot-version=v1.0 MITPNFFPLGFTLLGYFLKLTFTFLMGLSFKLSAKYCAAYTLIVNAKGVLEVGVFLSFGNLAKRQLETTYAIFLVFFLSSIAPPIIRLLYDPTKQYIGYK RKCIQYAPDNAPLHILACAHKQDDAVAVLKLLEFSNPTKQSPLVVLGLCLEELVSSFTPLLINHQLGQKVSSSKGSKSQHILDVFNYFAPQFKKLAQVNA FTAISHLKQMHEDICWLAFNKAVPLIVLPFHNKWNHKGQLIHSTEDLRSLNINVLNRAPCSVGILVDRRRALGLSSIFVTSAVYRVVLLFVGGSDDREAL AFALRMAGSPRVQLTIVQFMVGEENVVDRWEAMLDAEAIRIMRQEVYVNGNVKFVEKHVRDGSDTSTIVRQMETNLVLVIVGRRHDTNCQALSGLAEWLD VPKLGPLGDILASQDVTAATSVLVVQQQIMKASHSNILN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22900		ATCHX3	cation/H+ exchanger 3, ARABIDO...		Lus10040961 [exp]	0	1
					Lus10020211 [exp]	6.3	0.7236
AT1G32250			Calcium-binding EF-hand family...		Lus10030986 [exp]	13.0	0.7681
AT5G11000			Plant protein of unknown funct...		Lus10017128 [exp]	14.5	0.7474
AT4G27220			NB-ARC domain-containing disea...		Lus10008516 [exp]	15.7	0.7545
AT3G22530			unknown protein		Lus10035239 [exp]	29.4	0.6764
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10016283 [exp]	36.1	0.6954
AT3G57120			Protein kinase superfamily pro...		Lus10027054 [exp]	36.1	0.7354
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Lus10017537 [exp]	37.2	0.7197
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010055 [exp]	40.0	0.7305
AT5G10530			Concanavalin A-like lectin pro...		Lus10020446 [exp]	46.5	0.7092

Compare expression of checked genes

Lus10040961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.