Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44910 64 / 3e-11 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT3G44900 64 / 4e-11 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 61 / 3e-10 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT1G08140 60 / 6e-10 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT1G08135 59 / 1e-09 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1) AT2G13620 58 / 3e-09 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT1G06970 56 / 1e-08 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT1G08150 55 / 2e-08 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1) AT3G44930 55 / 3e-08 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT2G28170 54 / 7e-08 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009846 [exp] 342 / 8e-118 AT5G22900 115 / 3e-28 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10000161 [exp] 287 / 6e-93 AT5G22900 320 / 6e-99 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10013423 [exp] 189 / 1e-54 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10040963 [exp] 189 / 2e-54 AT3G44900 376 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10026408 [exp] 74 / 2e-14 AT2G13620 441 / 2e-142 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10043128 [exp] 72 / 8e-14 AT3G44900 540 / 0.0 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10037374 [exp] 70 / 4e-13 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 69 / 7e-13 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10030013 [exp] 64 / 4e-11 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182900 [exp] 146 / 1e-39 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.010G171200 [exp] 143 / 2e-38 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G099000 [exp] 135 / 1e-35 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.019G123700 [exp] 89 / 8e-20 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 81 / 7e-17 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.009G078000 [exp] 73 / 3e-14 AT5G37060 677 / 0.0 cation/H+ exchanger 24, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 24, cation/H+ exchanger 24 (.1) Potri.016G127800 [exp] 70 / 3e-13 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.006G176400 [exp] 69 / 6e-13 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G105200 [exp] 66 / 5e-12 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.013G153200 [exp] 62 / 2e-10 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10040962 pacid=23179686 polypeptide=Lus10040962 locus=Lus10040962.g ID=Lus10040962.BGIv1.0 annot-version=v1.0 ATGGAACATCCCCCATGGCGGGACAATGTTTCAACATTCTTTATTCCGTTTCAGCGTCCAATTGATCATGATGTTCTTCCTCTCCAACTCCATGCATTTT TTCCTCAGCAGCTACTTGCATCTCCCCAGAATCACCTCCGAAATCATGGCGGGAGTTCTATTAGGACCAACAGGGTTCGAGAAATGGTTGGGAACGAGGC GAAGCTGATATTCCCACCATTCCCAAACCAAGTGTTGGGTTCCTTATCCAAGATAGGATACATATTATTCGCATTCTTTGCAGGAATAAGGATGGACCCA AGCCTGATCCCGCAATCCGGAAGGAAAGCAGTATTCATGGGGATCCTTCTATTTTCTTACCCTTTCACTATGTTACACACAATTGTAGTTGAGTTCCACA AGGACAACATTTTCAACTTCCAACTCAAATTGGCAATTTACAAAGGTGTTGGAATCGTTTTTGGTTCTATCACACCTTCCCAATTCGTTGGAGTGAGTCA CCTCTTGACACAGCTTAGGATAACCAACTCTCAGCTTGGACACCTTGCCTTAGCATCTACATTGGTCAGCGAGTTGCTCCGATATGCCTACTCCTCCATT CTCGGTGTCCTGGAAGCGCTCATGTTCGTAGCCAGGAGATCGGGGATCCAATCCATTCTCTTCACCATGCTCTTGATAGGCTTCATTATGGTTGTGTCGA GAGGGTTAGTGCTTTGGGCAATCAGGAACACCCCACAGGGGAAACCCATGAAGGAAATCTGTTGGACTGCATTACCTTTTTGGTCCTTTCCTTTTGGGTC TTATCATACCAGCTGGATCTCCATTGGCAACCAGTTTGATTGCCAAGCTTGA
AA sequence Show only first row Show all	>Lus10040962 pacid=23179686 polypeptide=Lus10040962 locus=Lus10040962.g ID=Lus10040962.BGIv1.0 annot-version=v1.0 MEHPPWRDNVSTFFIPFQRPIDHDVLPLQLHAFFPQQLLASPQNHLRNHGGSSIRTNRVREMVGNEAKLIFPPFPNQVLGSLSKIGYILFAFFAGIRMDP SLIPQSGRKAVFMGILLFSYPFTMLHTIVVEFHKDNIFNFQLKLAIYKGVGIVFGSITPSQFVGVSHLLTQLRITNSQLGHLALASTLVSELLRYAYSSI LGVLEALMFVARRSGIQSILFTMLLIGFIMVVSRGLVLWAIRNTPQGKPMKEICWTALPFWSFPFGSYHTSWISIGNQFDCQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44910		ATCHX12	cation/H+ exchanger 12, cation...		Lus10040962 [exp]	0	1
AT5G01660			unknown protein		Lus10002863 [exp]	1.4	0.8960
AT3G53940			Mitochondrial substrate carrie...		Lus10012658 [exp]	2.4	0.8958
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Lus10035628 [exp]	2.6	0.9055
AT4G16160		ATOEP16-2, ATOE...	Mitochondrial import inner mem...		Lus10016878 [exp]	7.4	0.8272
AT2G14100		CYP705A13	"cytochrome P450, family 705, ...		Lus10024582 [exp]	7.7	0.8710
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10020001 [exp]	8.7	0.8147
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10026009 [exp]	18.0	0.8648
					Lus10033284 [exp]	18.3	0.8531
					Lus10018996 [exp]	19.4	0.8520
AT1G53200			unknown protein		Lus10011648 [exp]	19.4	0.7597

Compare expression of checked genes

Lus10040962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.