Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44900 352 / 1e-108 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT2G13620 346 / 5e-106 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT5G22900 340 / 1e-103 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT3G44930 330 / 1e-100 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT1G08140 328 / 2e-99 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT3G44910 319 / 1e-96 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT2G28180 314 / 5e-94 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT3G44920 308 / 3e-92 ATCHX11 cation/H+ exchanger 11, cation/H+ exchanger 11 (.1) AT5G22910 300 / 2e-89 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT1G08135 296 / 1e-87 ATCHX6B, CHX6B cation/H+ exchanger 6B, cation/H+ exchanger 6B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013423 [exp] 1405 / 0 AT3G44900 375 / 2e-117 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10000161 [exp] 680 / 0 AT5G22900 320 / 6e-99 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10040961 [exp] 483 / 3e-163 AT5G22900 271 / 7e-83 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10000154 [exp] 382 / 2e-125 AT5G22900 216 / 2e-63 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10041344 [exp] 355 / 1e-109 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10037374 [exp] 347 / 8e-107 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10009846 [exp] 323 / 2e-103 AT5G22900 115 / 3e-28 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10030013 [exp] 338 / 7e-103 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 337 / 4e-102 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182900 [exp] 696 / 0 AT3G44900 365 / 1e-114 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G099000 [exp] 678 / 0 AT5G22900 385 / 1e-121 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.010G171200 [exp] 637 / 0 AT2G13620 360 / 4e-112 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.018G098300 [exp] 361 / 3e-112 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 343 / 2e-105 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.010G183000 [exp] 334 / 8e-102 AT2G13620 474 / 8e-156 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G105200 [exp] 333 / 4e-101 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123700 [exp] 329 / 1e-99 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 295 / 1e-87 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 292 / 2e-86 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10040963 pacid=23179895 polypeptide=Lus10040963 locus=Lus10040963.g ID=Lus10040963.BGIv1.0 annot-version=v1.0 ATGATACCTTGTTCATTTGTCTTGAAACAAATTTTTAACTTCATTGTTTTTGGCCGGAATAATCCGATTCAACCCAGATCCCCCCCTCCCTCTAAGGAAG AATTATGGATGGATTCATTAACAACGGGAGTTCATCCTGATAAGATCCGATTAAATATAAGTGGAGATTGCTTCGAATACGTACCAGCTTCCTCACAAGG GATATGGAACATGCAATATGGAGAAAGCATCCTCAAATTTCCTTTGGTTCGATTCCATGTCCAGCTCCTCGTTATGCTCTTACTTCCCTATGCCTTCCAT TCCATCCTCAGGTTCCTCTATTTACCCCGGATCACCTCTGAGATGCTCACGGGTTTCATCCTTGGACCAAATGTACTACAGAAATTATCTCCTTCTGTAG CAAGGCTAATATTCCCTCCCGTCATAAACCAGTCCATGAATTCACTATCCAAGGTAGGGTTCATAATGTTTGCATTCCTCTCAGGAGTAAGGATGGATCC GGCATTGGTTAAGATATCGGGGAAGAAAGCCCTCGTGTTGGGGTTCGCCATCTTTGTCATCCCCTTCACAATGGTCCATACTTGTGCAGTCGAGTTCCCG CATCAGAGCCAACGCTCCGTTAGAATAAGGTTCGACAACTTGAAGTCCACAGACATATACCTTGCTCTCATCACCACGTCACAATTTGTCGGAGTCAACA CTGTCTTGATGCAGCTCAAGATCACAAATACACAACTGGGTCATCTAACTCTAGCCTCCACATTGATCAGCGAGTTGCTCCGGTTCGCCTACGCATTCCT TCTCGGATACTTGGAAGCTTTGATAACCATTGAGCCATTTGTCGGGACTAAGATATTGGTGGTCAGCATCCTTTTTTCGGTTCTGATCCTTGTGGTGCTG AAGAATTTGGTACTCTGGTTTATTAAGAAAACCCCAAGTGGGAAACCCATGAATGAGATTTACATACACATCGTTGTTGGAGTGTTGATGACATTAGCAT CTTCTGGCGATGCTGTTGGAGTTTATTACCTCTTCGGTCCATTCCTCTTTGGTTTGGTGATCCCAGCTGGGTCCCCACTAGCAACCAGTGTGATTGCAAA GCTTGAAACTACAGTCTCTGGTGTTTTTATGCCCATGTTGTTGGCCTACTCTTCAATCACATTTGACCTCCACATGTTTATTAAGACGTACGAAGATCGG TTGAACTTCCAGATCTCGGTTTATGGATATATCATTAAGTTGGTATTAACCCTTTTGTCTTGCATCGCCTGTAAAATGAGTGCCAGAGATTCAATTGCAT TTTCCCTCATTGTCAATTCCAAAGGCGTCCTTGAAGTCGCATCCATGTTGAGCTTCAGCGGTTTGTCAGTGAGTGAAGATCTAACCTTTTTGTCCATAGG AGAGCCGGACGCGACGAGTGCGATACTTCTAGTGTTTATCACAGCAACAATAATCCCACCAATGATCAAGCTGCTATACGATCCAACAAAGCAATATGTT GGGTACAAGAAGAAATGTGTTCAATTCTCTTCACATAACTCGGAGCTACCGGTTTTGGTATGCGCCCATAAGCAAGAAGATGCAGTGGCGGCCCTCAAAA TGCTCGAGTTCTGGAATCCAACTAGACAAAGCCCTCTCTCCATATTTGGTCTCTGCCTACAAGAGCTCGTAAGTAGCTATACACCTCAGCTGATCAACCA CCAATTGGGCCAGAAGATTACCGACTCTGAAGCCACAGTCGATAGTCACACACATCGAGGAACCAACCATGGGTCACAACCTATCGTTAATGTCTTCAAC TACTTCAAGATAGAGTTCAAGAAGCTGGTTCAGGTCAATGCCTTCACAGCGATCTCGCCTTTGAAGCTCATGTACGAGGACATCTGCTGGATCTCGTTCG ACAAGGCTGTCTGCATCGTCATCCTTCCGTTTCACAAGAAATGGAACTCAAAGGGGCAGATGATACACGAGAGTAAAGAATTGAGGAGCTTGAATTGTAC CTTGCTGGAAAGGGCGCCCTGTTCTGTAGGGATATTAATCGATCGCCGGACCAACCATGGGATTAACTCGATGTTTGTGTCGTCACCGGTGTACAGAGTG GCAGTGCTATTCTTTGGTGGGGCAGATGATCGGGAATCGTTGGCGATTGGGGGCAGGATGAGTGGAAACGCTAGGGTAATATTGACGGTGGTGAGGTTCC GAGGGGAAGAGGAGGAGTACGGGGGTAGGAATAACCAGAGCTGGGATGAGGTGTTCGACGAGGAGAGCATGAGAACGTTGAGGCAGGATGCAGCGGTGGG AGGGGAGAACGTGAAGTTTGTAGAGCAGAAGGTGACAGACGGGTCAGATACATCACGAATAGTTCATTCGTTGGGGGGTAGTTTTGATTTGGTGATAGTT GGGAGGCGGCACAAAGAGGAGATGGAGGCACTCTTAGGGCTAGCGGCGTGGTCGGAGTTGCCAGAGCTAGGTGTCGTCGGAGACATTCTCGCCGGTCCGG AAATGGGCACTTCTGTATCGGTGTTGGTGGTACAACAACAAATTATGCAGACTAGTCATAGTAGTGTCTTGAATTCCTAA
AA sequence Show only first row Show all	>Lus10040963 pacid=23179895 polypeptide=Lus10040963 locus=Lus10040963.g ID=Lus10040963.BGIv1.0 annot-version=v1.0 MIPCSFVLKQIFNFIVFGRNNPIQPRSPPPSKEELWMDSLTTGVHPDKIRLNISGDCFEYVPASSQGIWNMQYGESILKFPLVRFHVQLLVMLLLPYAFH SILRFLYLPRITSEMLTGFILGPNVLQKLSPSVARLIFPPVINQSMNSLSKVGFIMFAFLSGVRMDPALVKISGKKALVLGFAIFVIPFTMVHTCAVEFP HQSQRSVRIRFDNLKSTDIYLALITTSQFVGVNTVLMQLKITNTQLGHLTLASTLISELLRFAYAFLLGYLEALITIEPFVGTKILVVSILFSVLILVVL KNLVLWFIKKTPSGKPMNEIYIHIVVGVLMTLASSGDAVGVYYLFGPFLFGLVIPAGSPLATSVIAKLETTVSGVFMPMLLAYSSITFDLHMFIKTYEDR LNFQISVYGYIIKLVLTLLSCIACKMSARDSIAFSLIVNSKGVLEVASMLSFSGLSVSEDLTFLSIGEPDATSAILLVFITATIIPPMIKLLYDPTKQYV GYKKKCVQFSSHNSELPVLVCAHKQEDAVAALKMLEFWNPTRQSPLSIFGLCLQELVSSYTPQLINHQLGQKITDSEATVDSHTHRGTNHGSQPIVNVFN YFKIEFKKLVQVNAFTAISPLKLMYEDICWISFDKAVCIVILPFHKKWNSKGQMIHESKELRSLNCTLLERAPCSVGILIDRRTNHGINSMFVSSPVYRV AVLFFGGADDRESLAIGGRMSGNARVILTVVRFRGEEEEYGGRNNQSWDEVFDEESMRTLRQDAAVGGENVKFVEQKVTDGSDTSRIVHSLGGSFDLVIV GRRHKEEMEALLGLAAWSELPELGVVGDILAGPEMGTSVSVLVVQQQIMQTSHSSVLNS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10040963 [exp]	0	1
AT5G23520			smr (Small MutS Related) domai...		Lus10019219 [exp]	2.0	0.8077
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10026380 [exp]	8.7	0.7883
AT2G20830			transferases;folic acid bindin...		Lus10018559 [exp]	9.5	0.7513
AT3G60500		G3, CER7	ECERIFERUM 7, 3'-5'-exoribonuc...		Lus10036022 [exp]	10.5	0.8056
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10029547 [exp]	11.6	0.7386
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Lus10007172 [exp]	21.8	0.7048
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10023537 [exp]	25.7	0.7392
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Lus10037876 [exp]	33.0	0.7761
AT1G56310			Polynucleotidyl transferase, r...		Lus10031403 [exp]	38.5	0.7168
AT5G14520			pescadillo-related (.1)		Lus10001361 [exp]	38.5	0.7702

Compare expression of checked genes

Lus10040963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.