Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40410 450 / 8e-160 Staphylococcal nuclease homologue (.1.2) AT3G56170 429 / 7e-152 CAN Ca-2+ dependent nuclease, Ca-2+ dependent nuclease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041146 [exp] 180 / 1e-55 AT2G40410 125 / 7e-35 Staphylococcal nuclease homologue (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G074800 [exp] 516 / 0 AT2G40410 478 / 4e-171 Staphylococcal nuclease homologue (.1.2) Potri.010G182500 [exp] 509 / 0 AT2G40410 477 / 1e-170 Staphylococcal nuclease homologue (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0049 [flax] [poplar] Tudor PF00565 [flax] [poplar] SNase Staphylococcal nuclease homologue
Representative CDS sequence Show only first row Show all	>Lus10040967 pacid=23179628 polypeptide=Lus10040967 locus=Lus10040967.g ID=Lus10040967.BGIv1.0 annot-version=v1.0 ATGGGGAATGCACTCAGATTCCTGTACCGCAATTGCTGCAAACCCACTGCAGCAGAAGGCGACTATCAACCTTCTTCCTTAGCTCCCCATGGAGTTCCTG CATCCACCGTGGGGGTTTCAGCCCTTGCCAACGATTTGCTTCACTTCGAATCCACCTCCCAGGTCCCTGATGGATTAGCTGCCCATGTTGTCTCCTCCAA GAAAGCTCAAGCTAATTGGTACAGAAAGTTACTGGAGGCGTGGAAGGAAGCTAAACCACCTCCCAAAACGCCTGAGGAAGCTGCAAGACTTGTGATCCTC ACCCTCAAGAGACACCAAAAGACTGATGTTCAGGGTTTGTTGGCTTTCTATGGCCTTTCACTTCCTCCTCACACCCCGGCTAAAGTCGATGGTGGAGTCC CAACATCATTGCCCGAAGGGGTGAAGTATGAGCTACAGACATTACCAGTGGATGCAAAAGCAATACCTGATGGTGACACCATAACTGTCTATGTAAGCAC TGCCAATCCTAGGGAGTCATCTTGTCTTCCAGGAGATGTTCAAACTGCCGCTGTTCAGAGAGCGAAAGCTCGGGCAGAAAGGAACTATCCAAAGGCTGAT GCACTCCACAAAAAGATTATCGATGCTGGATATAGGGTACTGAATGTTCAGAATCAAGAGGTTCTTGCAAGAAAGTACAGAATCCGGCTAAGAGGAGTAG ATGCACCAGAGAGCTCAATGCCATACGGGAAAGAGGCCAAAGAGGAGTTGGTTAAGCTTATACAAGGGAAGTGTTTGAGAGTTCTTATTTATGATCAGGA TCGGTATGGTAGATGTGTAGGAGACATATACTGTAATGGCTTGTTTGTACAGGAAATCATGCTCAAGAAAGGACTCGTGTGGCACTATTTTGCATATGAC AAACGCTCAGAGCTAGCATCATGGGAAAAGCAGGCTCGAGCTAAACGTATTGGCTTATGGGCTTCTAAAAATCCTCAAGAGCCATGGGAATGGAGGAAAA ACAAGCGTGAAGGAAGATGA
AA sequence Show only first row Show all	>Lus10040967 pacid=23179628 polypeptide=Lus10040967 locus=Lus10040967.g ID=Lus10040967.BGIv1.0 annot-version=v1.0 MGNALRFLYRNCCKPTAAEGDYQPSSLAPHGVPASTVGVSALANDLLHFESTSQVPDGLAAHVVSSKKAQANWYRKLLEAWKEAKPPPKTPEEAARLVIL TLKRHQKTDVQGLLAFYGLSLPPHTPAKVDGGVPTSLPEGVKYELQTLPVDAKAIPDGDTITVYVSTANPRESSCLPGDVQTAAVQRAKARAERNYPKAD ALHKKIIDAGYRVLNVQNQEVLARKYRIRLRGVDAPESSMPYGKEAKEELVKLIQGKCLRVLIYDQDRYGRCVGDIYCNGLFVQEIMLKKGLVWHYFAYD KRSELASWEKQARAKRIGLWASKNPQEPWEWRKNKREGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40410			Staphylococcal nuclease homolo...		Lus10040967 [exp]	0	1
AT1G09880			Rhamnogalacturonate lyase fami...		Lus10030232 [exp]	1.0	0.8750
AT5G12200		PYD2	pyrimidine 2 (.1)		Lus10036064 [exp]	2.0	0.8647
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10002096 [exp]	2.4	0.8599
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10003261 [exp]	3.7	0.8083
AT1G02610			RING/FYVE/PHD zinc finger supe...		Lus10025031 [exp]	7.7	0.8368
					Lus10003592 [exp]	8.2	0.8032
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Lus10000829 [exp]	9.2	0.8009
					Lus10040816 [exp]	9.9	0.8192
AT5G62740		AtHIR4, ATHIR1	hypersensitive induced reactio...		Lus10004268 [exp]	10.7	0.8016
AT1G11400		PYM	partner of Y14-MAGO (.1.2.3)		Lus10007180 [exp]	18.3	0.8240

Compare expression of checked genes

Lus10040967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.