Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56180 163 / 1e-50 Protein of unknown function (DUF567) (.1) AT3G10986 143 / 8e-43 Protein of unknown function (DUF567) (.1) AT5G01750 121 / 4e-34 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 108 / 2e-29 Protein of unknown function (DUF567) (.1) AT2G14560 105 / 3e-28 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G33840 100 / 6e-26 Protein of unknown function (DUF567) (.1) AT3G16900 77 / 2e-17 Protein of unknown function (DUF567) (.1) AT2G38640 40 / 0.0003 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002477 [exp] 97 / 7e-25 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 97 / 7e-25 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 96 / 5e-24 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 94 / 1e-23 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014154 [exp] 90 / 6e-22 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 76 / 7e-17 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 74 / 8e-16 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 72 / 2e-15 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 72 / 2e-15 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G182300 [exp] 271 / 3e-93 AT3G56180 201 / 5e-66 Protein of unknown function (DUF567) (.1) Potri.008G075100 [exp] 258 / 4e-88 AT3G56180 177 / 2e-56 Protein of unknown function (DUF567) (.1) Potri.016G131850 [exp] 105 / 4e-28 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 100 / 7e-26 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 99 / 2e-25 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 98 / 5e-25 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 94 / 1e-23 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130400 [exp] 81 / 8e-19 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 76 / 1e-16 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 76 / 1e-16 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10040968 pacid=23179577 polypeptide=Lus10040968 locus=Lus10040968.g ID=Lus10040968.BGIv1.0 annot-version=v1.0 ATGGGGACGAGGACGGAATTGTATGGAGTGCCGCAGGTGAGCGTGGTAGGAGATGGGTATTGTTTCCCATACTGCAAGGAGCTTGTTGTTAAGAAGACTA TCAAGGGTCTCTCCAACGCTCAATTCGAAGTCTTCGACCCTTGCGGCAATCTCCTCCTCCGCGTCGAAGGTGGCGTCTGGAACCTCCACATGAAGCGCGT TTTTCGAGACCCTTCCGGCTTCCCCCTTCTCACTTTGTACGGCAAGTCAATAACATGGTGGCACAAATGGAGCGCGTACGCCAACGATGACAACATGGCA GCAGCAGAAGGTCAAGGGATGATGACAAATGAGGGCAACCTTCTGTTCACAGTGAAGCAATCACACCCTCTCCAGATAAAGAAGGATCTCAACGTTTACC TCTCAGATCACCTGAAGAAGACAGTAGCAGTAGCCGGCGCCCCTGATTTCAACGTCATTGGCTCCTACACTTCCCTCTCGTTCAAAGTCTACAAGGGCCA CAGGATCTTGGCAGAGGTTAAGCACAACTTCACCTTTGAGAGCTTCTACAAGGGCAAAGAGAGGTTCACTATCAAAGTTTATCCTGAGGTTGATTATGCC TTCATCATCGCCCTCCTTGTTATCATTGATGAGAACGATACTCCTTAA
AA sequence Show only first row Show all	>Lus10040968 pacid=23179577 polypeptide=Lus10040968 locus=Lus10040968.g ID=Lus10040968.BGIv1.0 annot-version=v1.0 MGTRTELYGVPQVSVVGDGYCFPYCKELVVKKTIKGLSNAQFEVFDPCGNLLLRVEGGVWNLHMKRVFRDPSGFPLLTLYGKSITWWHKWSAYANDDNMA AAEGQGMMTNEGNLLFTVKQSHPLQIKKDLNVYLSDHLKKTVAVAGAPDFNVIGSYTSLSFKVYKGHRILAEVKHNFTFESFYKGKERFTIKVYPEVDYA FIIALLVIIDENDTP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56180			Protein of unknown function (D...		Lus10040968 [exp]	0	1
AT1G06475			unknown protein		Lus10025392 [exp]	3.2	0.8418
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Lus10017406 [exp]	7.2	0.8387
AT5G05180			unknown protein		Lus10029012 [exp]	12.5	0.8173
AT5G05180			unknown protein		Lus10034251 [exp]	14.4	0.8262
AT4G38810			Calcium-binding EF-hand family...		Lus10026291 [exp]	15.1	0.8100
AT4G12010			Disease resistance protein (TI...		Lus10006789 [exp]	18.3	0.7966
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Lus10041052 [exp]	19.5	0.7915
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10025410 [exp]	20.7	0.8003
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	21.7	0.8116
					Lus10004679 [exp]	24.6	0.7923

Compare expression of checked genes

Lus10040968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.