Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19800 164 / 3e-48 Protein of unknown function (DUF177) (.1), Protein of unknown function (DUF177) (.2) AT5G36120 155 / 1e-45 atylmg3, CCB3 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1) AT5G21920 43 / 0.0002 ATYLMG2 YGGT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013424 [exp] 206 / 1e-65 AT5G36120 172 / 1e-55 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G094700 [exp] 183 / 1e-55 AT3G19800 214 / 4e-70 Protein of unknown function (DUF177) (.1), Protein of unknown function (DUF177) (.2) Potri.002G062100 [exp] 154 / 1e-44 AT5G36120 184 / 2e-59 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1) Potri.005G199000 [exp] 149 / 1e-42 AT5G36120 181 / 4e-58 "cofactor assembly, complex C \(B6F\)", cofactor assembly, complex C (B6F) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02325 [flax] [poplar] YGGT YGGT family PF02620 [flax] [poplar] YceD Large ribosomal RNA subunit accumulation protein YceD
Representative CDS sequence Show only first row Show all	>Lus10040969 pacid=23180037 polypeptide=Lus10040969 locus=Lus10040969.g ID=Lus10040969.BGIv1.0 annot-version=v1.0 ATGTCTGAAGCAGCAGCTCCTGGGTTTCATTTAGTATCAAGAATCGGCATCAGTAGTAGTCGTAGAAGCAGTTTCAATAGAGGAGTCAATATTAAGCAGC AGCAGCAGCTACTCAAATCCACCAAACTACCAACCTACAAAATCACTGCTTCTGCTGCTGGTTCAAAAAGGGACGGCTCACAAGAGCAGCAGCCGGGCGG AAGCATCAGAAAGAGAAGCAGAAGTTCGAGGCGGTTGATAAAGATATCCACAGGGGAAGGGAGGTGGAACAAGAGATATAGCCGCCACTACTCATTCAGC CTTTGGGACTTGCAGTTAGAGGATTTGGTCCAAGATGATGACGCAACTGTCTCCGTCACCCTCTCCGTTGACAAGCATGCAAGCTTTGGGTTCTCGGTGG ACGGGGACATCGTAATATCCTTCACCAGAAAATGCAGCAACTGCAGTTCCCCATACTCCACACAGATTGATACGAAGGTGAATGTGTGGGTTCTGCCGTC AAGTAGAGAGAGACATGAAAAAGGGTCGATCGGAGTTCCACTTCCAGTCATTGGAGGAGAAGATGACCCATCTGTTATCTACGTGAAGCCAGGGCACGAA GCCGATCTTGACTCGCTGGTGCAGGACTCGGTCCGTTTAGCCCTTTCTGTCAAGGATACGTCGGATACTTGTTCAGCGAAGTGTGAGCAAATGCAACCAG AATTTCACCATATTGGGAAACGGAATGAGGTTGGAGTGGACAAGAGATGGTCAAGGCTTTTGCAGCTCAAGAAACAAATTAGCTCTGAAAGCCACAACTA TCCTCGCAGCAGCATATGGTGTTCAAACCTAGTGCTCTCCAAATCACATTTGACGACTACCTCTGCAATACTCAACCAGGACCACTACACACAGCTAGGA CTGGGAGCATGGATGGTGGAAGCTGATATAGACCCGGCCACTGCAAAACTTGCAATTGCCTTTCTGGGGCCATTCCTCTCAGGGTTGTCCTTTCTTTTCA TTGTGAGGATTGTCATGTCTTGGTATCCAAAGCTTCCTGTCGACAAGTTCCCTTATGTCGTTGCCTATGCTCCCACGGAACCAATTCTCGCAGTGACTCG TAAAGTTATCCAGCCGCTTGGTGGAGTCGACGTGACTCCTGTGGTTTGGTTCGGGTTGATCAGCTTCCTCAACGAGATACTTGTTGGCCCCCAGGGGCTT CTGGTTCTCATTTCACAACAAGTTGGCTGA
AA sequence Show only first row Show all	>Lus10040969 pacid=23180037 polypeptide=Lus10040969 locus=Lus10040969.g ID=Lus10040969.BGIv1.0 annot-version=v1.0 MSEAAAPGFHLVSRIGISSSRRSSFNRGVNIKQQQQLLKSTKLPTYKITASAAGSKRDGSQEQQPGGSIRKRSRSSRRLIKISTGEGRWNKRYSRHYSFS LWDLQLEDLVQDDDATVSVTLSVDKHASFGFSVDGDIVISFTRKCSNCSSPYSTQIDTKVNVWVLPSSRERHEKGSIGVPLPVIGGEDDPSVIYVKPGHE ADLDSLVQDSVRLALSVKDTSDTCSAKCEQMQPEFHHIGKRNEVGVDKRWSRLLQLKKQISSESHNYPRSSIWCSNLVLSKSHLTTTSAILNQDHYTQLG LGAWMVEADIDPATAKLAIAFLGPFLSGLSFLFIVRIVMSWYPKLPVDKFPYVVAYAPTEPILAVTRKVIQPLGGVDVTPVVWFGLISFLNEILVGPQGL LVLISQQVG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19800			Protein of unknown function (D...		Lus10040969 [exp]	0	1
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Lus10004576 [exp]	1.7	0.9585
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	2.8	0.9555
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10035119 [exp]	3.0	0.9506
AT1G32060		PRK	phosphoribulokinase (.1)		Lus10030949 [exp]	3.9	0.9085
AT3G47860		CHL	chloroplastic lipocalin (.1)		Lus10037318 [exp]	4.1	0.9063
AT3G53470			unknown protein		Lus10019901 [exp]	4.9	0.9258
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	5.0	0.9461
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	5.7	0.9471
AT5G26670			Pectinacetylesterase family pr...		Lus10000253 [exp]	5.8	0.8890
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	5.9	0.9358

Compare expression of checked genes

Lus10040969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.