Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19780 500 / 4e-157 unknown protein AT1G33780 53 / 8e-07 Protein of unknown function (DUF179) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013425 [exp] 1440 / 0 AT3G19780 743 / 0.0 unknown protein Lus10006653 [exp] 182 / 2e-53 AT3G19780 99 / 2e-25 unknown protein Lus10009463 [exp] 59 / 2e-08 AT1G33780 379 / 6e-132 Protein of unknown function (DUF179) (.1) Lus10005224 [exp] 58 / 2e-08 AT3G29240 291 / 2e-98 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2) Lus10001286 [exp] 57 / 4e-08 AT1G33780 386 / 9e-135 Protein of unknown function (DUF179) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G070400 [exp] 732 / 0 AT3G19780 770 / 0.0 unknown protein Potri.019G073000 [exp] 60 / 5e-09 AT1G33780 349 / 4e-120 Protein of unknown function (DUF179) (.1) Potri.004G125800 [exp] 54 / 3e-07 AT3G29240 358 / 3e-124 Protein of unknown function (DUF179) (.1), Protein of unknown function (DUF179) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02622 [flax] [poplar] DUF179 Uncharacterized ACR, COG1678
Representative CDS sequence Show only first row Show all	>Lus10040970 pacid=23179545 polypeptide=Lus10040970 locus=Lus10040970.g ID=Lus10040970.BGIv1.0 annot-version=v1.0 ATGAAGCACAAAGTGGTAGGACTGCTCCTCTCACTACTCTCGGTCTTCGTCCTCATCGCCGCCGCCGAATCATCACAGCCGTCGGGAAACGACCGCGATC TGGAAGGCCTTGGAAGATGGCACACCCTCGACAGGCACAACTACTCATCTCAGATCAGAATGCATCCCAACATCATCCTGATCGTCTCCGTCCCATGGTC CGGCGAATCGAGGTCCTTGATGAGGGAAATAACCGATTTAGTCTCTGTCCGTAAGGAGGAATTCGGCTCCCTCGAGTTGATGTATCTACATAGGAACAAG GAGAAGATGCTCGCTGATGCGATTGGTGCAGCCGGTGAGGGGAGAGTAACAGTTTTCTATCTCCATCACTCTGTGCCTTACAAGTATCAAGGCAGGCTTC GAGCCGTAAGTATATTGTACTCGATTAGTCCTTATTTGTCGCACGAGCCTGAAGAGATTCCTCTCAAGGAGCTCAAGTCCGAGCACGAGCTGCGGGCATT CGTTGAATCGACCGACAAAGCCGTTCTTCTCATGGAGTTCTGTGGATGGACGCGTCAGTTGCTGGGCAGGGCTAATAAGAACGAGACTCGTAGTAGCGGT TTCCAATTCCAAGGGGATTTTGCTGGCGCAAATGGAGAAATTGAGAGACCACCCGTTTACCTAGGACAGGAAAACCAGAAGGTGGCTGGGGATGAGAAGG CAATGCTGACATGTGGTACTCAAAGTGCATTTAGTGGCATTCCTTCACTTGGAGAATTCAGGTCTGGAAACGATAGCTCCACTGGCCATGAAGATGAGTC CTGGGATGCTGAGAAAGCAAAATCGGACACTGGATTTTCTTGTACCTATGAACAGTTTCAACAATTCGACTCAGTCTTCTCAAAGTTCATGGCTGTGGCA AGAGAGTTCTTTCTACCTAATGAAAAGCATAGATTTGGTCTTGTTTCAGAACAGTCCTTGCTTTCATATCTTGGTATTGGAGACCCTGGTTCTTGGGCAG TGATGCTTGCCTGTAATGGATGTCAAACTCCTTCAAGGATTCTGAAGAATGATGATGATATTAAGACTACTCTGCAGTTAGACAAGTCAGTTGTTATTGA GCTGGAAGGCAATGGAGAGGATGCTGATCCTACGTTCCCATCAAATAAGCCTTCAGTGGTTCTTTTTGTGGATAGGTTGTCCGACTTATCAGAAATGAGA AGAAAGAGCAGGGAAGCTCTTCATCAGTTCAGAGACCTTGCATTTCATCATCAACTTCCGGATAGCACGAGGCATCAAAATGATGACAGGTCAGAAAGTT TGTACAACCAAAAGCCTCGAAAGATGCATGTTCTATCTTCAGGCCATCCTGCACTGAAGCTATCTTCTTCAGCTCAGAGGTTTGATTTAAAGGATAAGAT GTCAATAATGGTCGTAAATGATGCTAAACATGCTATTTTAGAGAATGTGCAAGTGGATTTTCAGGGGAAGTCATTGCAAGAGATCCTAAATTTCGTTGTT CAGCAGAAGAAGGAAGCAACACTGAGTTCAGTGGCAAAAGAGGCTGGTTTCCAACTTTTGTCTCAGGACCAGAGTATAAAGCCAGACTTACTGCCAACAG ACGGTGAGGTAGAGGCGACCCATGACTCGTCTAAATCTTCAAAATTGAGTCCCACCACAAGATCTGACAACTGGGACAAGGATTTGGCTCTTGAGGAAAG GTCCAGCTATGTTGGGTCTCCTCAAGTTGTGGAGAAGTCAGCTTATGTGCTGGAAGGCAATGGAGAGGATGCTGATCCTACGTTCCCATCAAATAAGCCT TCAGTGGTTCTTTTTGTGGATAGGTTGTCCGACTTATCAGAAATGAGAAGAAAGAGCAGGGAAGCTCTTCATCAGTTCAGAGACCTTGCATTTCATCATC AACTTCCGGATAGCACGAGGCATCAAAATGATGACAGGTCAGAAAGTTCGTACAACCAAAAGCCTCAAAAGTTGCATGTTCTATCTTCAGGCCATCCTGC ACTGAAGCTATCTTCTTCAGCTCAGAGGTTTGATTTAAAGGATAAGATGTCAATAATGGTCGTAAATGATGCTAAACATGCTATTTTAGAGAATGTGCAA GTGGATTTTCAGGGGAAGTCATTGCAAGAGATCCTAAATTTCGTTGTTCAGCAGAAGAAGGAAGCAACACTGAGTTCAGTGGCAAAAGAGGCTGGGTTCC AACTTTTGTCTCAGGACCAGAGCATAAAGCCAGATGACTTACTGCCAACAGATGGTGAGGTAGAGGCGACCCATGACTCGTCTAAATCTTCTAAATTGAG TCCCGCCACAAGATCTGACAACCGGGACAAGAATTTGGCTCTAAATCCTGTGGAAAGGTCCAGCTATGTTGGGTCTCCTCAAGTTGTGGAGAAGTCAGCT TATGTGGTCACATCAGACGACCCTATAAAGCTTGATAAACTTTTATCAGATGTTGAGGTATCAGTTCTAGAAACTATGAAATTACAACCAGAGCTATATC CTAGTGTGGGCACGTCAAGTGAAGAGCTAGAATTTGGGAGGTTTCATGGTTCTTTTTTGTTTTCTGATGGAAACTACAGATTACTTAAGGCCTTGACAGG GGAGACTAGGATCCCTTCCTTGGTGATAATGGATCCTGCTTCACAGCAACACTACGTCCTCCCAGGAAATATTGATTTCAGCTATGCCACGATTGAAAGC TTTGTTGACAGATTTCTGAACAGAACTCTTGTCGCGTTTCAACTCTCCGAGTCTGAACCTGCAAGCTCCAGGGAAGGTCCCTACCCACCTTTTGTTAACC AGAATTTCCATGAGGTAGACTCTATCCCTCGGGTTACAGCTCACAGTTTCCATGAAATGGTTATTGGTTTTAATAAATCTGATAATGAGAACACGGCTGG TGCGTGGAATGAAGATGTGTTGGTCCTGTTTAGCAACACCTGGTGTGGGTTTTGCCAGAGAATGGATTTGGTAGTTCGTGAAGTCTTTCGGGCAATAAAA GGCTGTATGAATGTGTTGAAAATCGGTTCTCGCATCAGAGACCCAATTTTTAGTTGCTCCTCGGAGGTGAAATTTCCTAAGATCTTCTTAATGGACTGCA CACTGAATGATTGTAGTCTTATCTTGAGATCAATGAGCATGAGAGATGTTTATCCCGCTCTTTTGTTGTTTCCAGCAGAAGTAAAAGTGGCTATCCCTTA TGAAGGAGATGCAACAGTGCATAAGATTATTGAGTTTATAGTTAATCATAGCAGCGATTCAGAACATCTAACCAATGAGAACGGAACGTTAAGGCCTGTA TTTGGAAAAGGAGGCACAGTTGAGAAGTTAGTGAAGGATTCATCAGTAACGACCAAATTTGCCAAGGATGCATCTGTTGAACCCCAGGAGGTGATATTGA AACACAGAGCAACAGAAAAAGCAGTGACCTACAGTGGAACTGGATCTCTTACATCCAGCCAACCTCAAGTGGCGGTTGGCTCAATTCTCACTGCTACGGA AAAGATAACTTCACAACCGTTTGACAACTCACAAGTAATCATTGTTGCAGCTGACGAAAAGGAAGGATTTCAGGGTCTAATCTATAACAAGCCTCTAGGT TGGGAGTCTGTTCGGAGTCTGGAAGAAGGGCTGAAAGTGCTGAAAGAGGCTCCCCTGTCTTTCGGTGGTCCACTTGTGATATCTGGAATGCCTCTAGCTG CATTAACAAGAGAAGCAATCAAAGATGATGATGATGAACTCCCAGAAGTTGCCCCAGGTGTCTACTTCCTTAATCAACAAGCTACACTCAACGAAATTGA AGCCATCAGGTCAGGGAATCAGACTGTGTCTGATTACTGGTTCTTTCTGGGGTTTTCAAGCTGGACCTGGGAACAACTGTTCAATGAGATTGCCGCAGGT TCCTGGGATGTAAACGAGCACGGCATTGAGTACTTGGATTGGCCAGCACGCTAG
AA sequence Show only first row Show all	>Lus10040970 pacid=23179545 polypeptide=Lus10040970 locus=Lus10040970.g ID=Lus10040970.BGIv1.0 annot-version=v1.0 MKHKVVGLLLSLLSVFVLIAAAESSQPSGNDRDLEGLGRWHTLDRHNYSSQIRMHPNIILIVSVPWSGESRSLMREITDLVSVRKEEFGSLELMYLHRNK EKMLADAIGAAGEGRVTVFYLHHSVPYKYQGRLRAVSILYSISPYLSHEPEEIPLKELKSEHELRAFVESTDKAVLLMEFCGWTRQLLGRANKNETRSSG FQFQGDFAGANGEIERPPVYLGQENQKVAGDEKAMLTCGTQSAFSGIPSLGEFRSGNDSSTGHEDESWDAEKAKSDTGFSCTYEQFQQFDSVFSKFMAVA REFFLPNEKHRFGLVSEQSLLSYLGIGDPGSWAVMLACNGCQTPSRILKNDDDIKTTLQLDKSVVIELEGNGEDADPTFPSNKPSVVLFVDRLSDLSEMR RKSREALHQFRDLAFHHQLPDSTRHQNDDRSESLYNQKPRKMHVLSSGHPALKLSSSAQRFDLKDKMSIMVVNDAKHAILENVQVDFQGKSLQEILNFVV QQKKEATLSSVAKEAGFQLLSQDQSIKPDLLPTDGEVEATHDSSKSSKLSPTTRSDNWDKDLALEERSSYVGSPQVVEKSAYVLEGNGEDADPTFPSNKP SVVLFVDRLSDLSEMRRKSREALHQFRDLAFHHQLPDSTRHQNDDRSESSYNQKPQKLHVLSSGHPALKLSSSAQRFDLKDKMSIMVVNDAKHAILENVQ VDFQGKSLQEILNFVVQQKKEATLSSVAKEAGFQLLSQDQSIKPDDLLPTDGEVEATHDSSKSSKLSPATRSDNRDKNLALNPVERSSYVGSPQVVEKSA YVVTSDDPIKLDKLLSDVEVSVLETMKLQPELYPSVGTSSEELEFGRFHGSFLFSDGNYRLLKALTGETRIPSLVIMDPASQQHYVLPGNIDFSYATIES FVDRFLNRTLVAFQLSESEPASSREGPYPPFVNQNFHEVDSIPRVTAHSFHEMVIGFNKSDNENTAGAWNEDVLVLFSNTWCGFCQRMDLVVREVFRAIK GCMNVLKIGSRIRDPIFSCSSEVKFPKIFLMDCTLNDCSLILRSMSMRDVYPALLLFPAEVKVAIPYEGDATVHKIIEFIVNHSSDSEHLTNENGTLRPV FGKGGTVEKLVKDSSVTTKFAKDASVEPQEVILKHRATEKAVTYSGTGSLTSSQPQVAVGSILTATEKITSQPFDNSQVIIVAADEKEGFQGLIYNKPLG WESVRSLEEGLKVLKEAPLSFGGPLVISGMPLAALTREAIKDDDDELPEVAPGVYFLNQQATLNEIEAIRSGNQTVSDYWFFLGFSSWTWEQLFNEIAAG SWDVNEHGIEYLDWPAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19780			unknown protein		Lus10040970 [exp]	0	1
AT3G19780			unknown protein		Lus10013425 [exp]	1.0	0.8603
AT5G23080		TGH	TOUGH, SWAP (Suppressor-of-Whi...		Lus10000866 [exp]	2.4	0.8564
AT1G55750			BSD domain (BTF2-like transcri...		Lus10020465 [exp]	2.4	0.8415
AT2G47390			Prolyl oligopeptidase family p...		Lus10025027 [exp]	3.5	0.8111
AT5G25480		AtDNMT2, DNMT2	DNA METHYLTRANSFERASE 2, DNA m...		Lus10020155 [exp]	4.6	0.8082
AT3G23900			RNA recognition motif (RRM)-co...		Lus10032590 [exp]	5.2	0.8009
AT5G07980			dentin sialophosphoprotein-rel...		Lus10040532 [exp]	6.0	0.8353
AT1G17440		CKH1, TAF12b, E...	TBP-ASSOCIATED FACTOR 12B, ENH...		Lus10001251 [exp]	8.0	0.7625
AT1G07910		ATRNL, RNL, AtR...	ARABIDOPSIS THALIANA RNA LIGAS...		Lus10017071 [exp]	10.2	0.8080
AT1G01930	C2H2ZnF		zinc finger protein-related (....		Lus10038006 [exp]	10.6	0.7852

Compare expression of checked genes

Lus10040970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.