Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18620 256 / 9e-83 DHHC-type zinc finger family protein (.1) AT4G22750 51 / 6e-07 DHHC-type zinc finger family protein (.1.2) AT4G22753 50 / 2e-06 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT3G09320 46 / 2e-05 DHHC-type zinc finger family protein (.1) AT3G60800 46 / 2e-05 DHHC-type zinc finger family protein (.1) AT3G56930 46 / 4e-05 DHHC-type zinc finger family protein (.1.2) AT4G00840 44 / 7e-05 DHHC-type zinc finger family protein (.1) AT5G05070 43 / 0.0003 DHHC-type zinc finger family protein (.1) AT2G40990 43 / 0.0004 DHHC-type zinc finger family protein (.1) AT5G04270 42 / 0.0004 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024377 [exp] 47 / 1e-05 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 47 / 1e-05 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10038701 [exp] 47 / 2e-05 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10024561 [exp] 46 / 2e-05 AT3G60800 411 / 2e-145 DHHC-type zinc finger family protein (.1) Lus10012096 [exp] 46 / 3e-05 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10032199 [exp] 46 / 3e-05 AT3G60800 409 / 2e-144 DHHC-type zinc finger family protein (.1) Lus10010447 [exp] 46 / 4e-05 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10002694 [exp] 45 / 7e-05 AT4G00840 353 / 4e-122 DHHC-type zinc finger family protein (.1) Lus10015872 [exp] 44 / 8e-05 AT4G22750 241 / 4e-88 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G104000 [exp] 48 / 5e-06 AT4G00840 297 / 5e-101 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 48 / 5e-06 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.014G069200 [exp] 47 / 1e-05 AT3G60800 447 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.016G025200 [exp] 47 / 2e-05 AT5G05070 468 / 1e-164 DHHC-type zinc finger family protein (.1) Potri.002G147300 [exp] 47 / 2e-05 AT3G60800 441 / 3e-157 DHHC-type zinc finger family protein (.1) Potri.010G226100 [exp] 46 / 2e-05 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 46 / 2e-05 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.003G115600 [exp] 46 / 3e-05 AT3G60800 346 / 2e-119 DHHC-type zinc finger family protein (.1) Potri.006G027500 [exp] 45 / 5e-05 AT5G05070 456 / 9e-160 DHHC-type zinc finger family protein (.1) Potri.001G117100 [exp] 45 / 6e-05 AT3G60800 365 / 6e-127 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10040971 pacid=23179619 polypeptide=Lus10040971 locus=Lus10040971.g ID=Lus10040971.BGIv1.0 annot-version=v1.0 ATGAATGCCATTTTTTCCCTTGCAAAACAGGAGCAATTTGTGACAACAGTCTCAGAGGATCATGAAACATCTTGCTGGGGCTGTGGTTTACGCCTAGTTC TTCCATCCTACGCACCGGTTTTCAAGTGTGGTTGGTGTGGAGCAGTGACTAACCAAAATGATGGGAAACGTGAAAATAAATGGTTGCGGTGGAAACGCAT TCGTGACCGGTGCTTCGTATGTGTCCTCATTGGGTTCATGCTCGTAGTAATATGTGGTGGCGTGTGGGCAGTGCATCCTATTATTTTCAGAATCAGCATA GGCTATGGTACTCTCCACTCGTTCATTACAGCTGTCTTGTCAGTGACTACTCTTTCAACATTTAGCCTTGCTGCCTTCTGTTGTGCTGGGAAACCTCCAA TCATACATTGGGGTAGCTATCCAGTTGTAGGGAAAGGTCACCTGGAAAACTACACCTTCTGTCATGATTGTTTAAGGCCCAAATCACCCAGAAGTCATCA TTGTCGCTCTTGTGGAATGTGCATATTGGACATGGATCACCACTGCCCTTTCGAACTTGGCTTGGCATACCGTATAGAAGAAGATCAGAATGAAACAGTC CTGGTCACAAATAGGAAACTGTGTGGGTGCAGCAAATCACAGGCACTTCATTTTGTTCCTCATATCAGCAGTGTGCAGTACGCTATACGTCGCAACAGTG TGTGCTTATGTAGGATGTCAATTATGGCCGCCATTAACGTACAGTTCCGCAGGGCCTTGGAGCGGGTTGAACCGCGAGGTGGCTTGGAGAGCATCGCGAG AGATCATTCTGGGGGTGCTGAACTCGGCTTTGCTTCTATCAGCAAGAGGACTCGTCGTGGTTTATCTGTTCTTTTCCAGTGTTTCGGTGCAGATTGGGTT AAGCGTGCTTCTTTGGCAGCAGCTTTCTTACATATACGAAGGGAAGACTTATCTCAGCCATTTAAGCTCTCAGGGCGGAAACGAGGTTGGAGACAGAGAC TGGAAGAACATTCTACGATTCTTCGGGTGCCCATATTCAGTGTCGAAATACTTGCCGAACGTCCGGAATCCCCAGAAGAGGCACAAGAAATGAAAGCACA GATACGCAGGGAGGGGTTCTCTTTCTTCCTTCGCTAA
AA sequence Show only first row Show all	>Lus10040971 pacid=23179619 polypeptide=Lus10040971 locus=Lus10040971.g ID=Lus10040971.BGIv1.0 annot-version=v1.0 MNAIFSLAKQEQFVTTVSEDHETSCWGCGLRLVLPSYAPVFKCGWCGAVTNQNDGKRENKWLRWKRIRDRCFVCVLIGFMLVVICGGVWAVHPIIFRISI GYGTLHSFITAVLSVTTLSTFSLAAFCCAGKPPIIHWGSYPVVGKGHLENYTFCHDCLRPKSPRSHHCRSCGMCILDMDHHCPFELGLAYRIEEDQNETV LVTNRKLCGCSKSQALHFVPHISSVQYAIRRNSVCLCRMSIMAAINVQFRRALERVEPRGGLESIARDHSGGAELGFASISKRTRRGLSVLFQCFGADWV KRASLAAAFLHIRREDLSQPFKLSGRKRGWRQRLEEHSTILRVPIFSVEILAERPESPEEAQEMKAQIRREGFSFFLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18620			DHHC-type zinc finger family p...		Lus10040971 [exp]	0	1
AT3G55290			NAD(P)-binding Rossmann-fold s...		Lus10007039 [exp]	2.4	0.9170
AT3G21865		PEX22	peroxin 22 (.1)		Lus10015100 [exp]	3.0	0.9264
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10021914 [exp]	3.2	0.9246
AT4G10100		CNX7, SIR5	"co-factor for nitrate, reduct...		Lus10041075 [exp]	4.0	0.9151
AT4G05440		EDA35	embryo sac development arrest ...		Lus10027955 [exp]	4.6	0.9241
AT2G37480			unknown protein		Lus10023755 [exp]	7.9	0.9126
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10024887 [exp]	8.1	0.9003
AT1G23440			Peptidase C15, pyroglutamyl pe...		Lus10029137 [exp]	8.7	0.9217
AT5G46840			RNA-binding (RRM/RBD/RNP motif...		Lus10004563 [exp]	11.5	0.9098
AT3G15352		ATCOX17	ARABIDOPSIS THALIANA CYTOCHROM...		Lus10037356 [exp]	14.5	0.9004

Compare expression of checked genes

Lus10040971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.