Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10280 450 / 3e-157 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G11730 337 / 4e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G25970 323 / 5e-108 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G21310 322 / 1e-107 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G51770 318 / 2e-105 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G68390 317 / 3e-105 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G16170 298 / 1e-97 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G68380 295 / 1e-96 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G73810 295 / 1e-96 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G10880 271 / 9e-85 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013427 [exp] 689 / 0 AT1G10280 528 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10002989 [exp] 501 / 1e-177 AT1G10280 525 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10024468 [exp] 501 / 2e-177 AT1G10280 524 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005504 [exp] 327 / 5e-109 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10005505 [exp] 327 / 5e-109 AT5G11730 499 / 1e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10035828 [exp] 328 / 7e-109 AT1G68390 401 / 7e-138 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10036610 [exp] 327 / 2e-108 AT1G68390 404 / 3e-139 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10007457 [exp] 330 / 3e-108 AT5G11730 489 / 1e-170 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10009738 [exp] 315 / 8e-105 AT3G21310 511 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G001700 [exp] 476 / 6e-168 AT1G10280 543 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G228100 [exp] 449 / 4e-157 AT1G10280 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.006G233400 [exp] 337 / 2e-113 AT5G11730 557 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121900 [exp] 333 / 3e-111 AT5G11730 409 / 1e-141 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.018G059100 [exp] 325 / 7e-109 AT5G11730 548 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045400 [exp] 324 / 3e-108 AT1G68390 390 / 2e-134 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G121800 [exp] 322 / 3e-107 AT1G68390 399 / 1e-137 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G195900 [exp] 322 / 3e-107 AT3G21310 504 / 8e-180 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.015G045500 [exp] 315 / 3e-104 AT5G16170 394 / 2e-135 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G097700 [exp] 311 / 3e-103 AT5G16170 452 / 6e-159 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10040972 pacid=23180026 polypeptide=Lus10040972 locus=Lus10040972.g ID=Lus10040972.BGIv1.0 annot-version=v1.0 ATGGCGAGGCTTAGAGAAGATGGGTCATCAGAAATTGCCCATCTGGGTTTGCTCAAACTGCTCAAAGTCTTGTCATTTTTACTCATATTCGCTGCTGGGA TCATTCTTGGGCTGTTGGCAAGCTCTCACGTCAACACTCTCTTCAACTCACAAAGGGATTTGTTTTATGATGTCACAACTACTACTACTACTACAAGTAT TTTATCTGATGCTAACAGCAGCATCAATTGCAACATCAGCAGCAGCAGCTCCCCAAATGATAGCGTTGTGAAGCCTTGCAACTGCAAGTCTTGTGATGAT GGAGATGTTGATTGTTTGAGTATGGACACTTTTCTTCATCCCAAACACTTGGCTCATGGAATGAATGATGAAGAGATTTTCTGGAGGGCTTCTTTGGTCC CTACAAAGAGAGACTATCCTTTTGATAGATTGCCTAAGGTTGCTTTCATGTTCTTGACTAGAGGCCCTATGCCTTTGTTGCTTCTCTGGGAGCGCTTCTT CAAAGGTCATCACGACTTCTTCACTATTTATGTTCATACCGATCCTGGTTATGTCCTCAATGTTCCCACTGATTCTCCTTTCTATGGAAGACAGATCCCT AGCCAGCAAGTTGAATGGGGAACTGTCTCACTGCTCGACGCAGAGAGGCGCCTCCTAGCCAACGCTCTCCTGGAATTCTCAAACGAGCGGTTCCTTCTCT TCTCCGAGAGCTGCATCCCGATCTACAATTTCCCAACAGTCTATAACTACCTGATCCATTCACAACAAAGCTTCGTGGAGTCCTACGATGACCCTTCTCG TTACGGGCGTGGCAGGTACAGCAGGAAGATGCTTCCAAACATATGGGTCAAACAATGGAGGAAAGGGTCCCAGTGGTTCGAGATGCAGCGAGCCTTAGCT TCTTACATAGTGTCGGACACTAAGTACTATACTCTATTCAAGAAGCATTGCACGCCAGCTTGCTACCCGGACGAGCATTTCCTTCCAACTTTCATCCACA TGTTCCATGGATCGCTGAGTGCTAACAGGACCTTGACATGGGTGGATTGGTCGTTGGGAGGTCCGCATCCAGCAACTTACGGTGCAGTTAATATCACGGA GAGTTTCATACAGTCGATTCGGATGAATAAAACGCTGTGTTCGTATAATACAGGAACCACACCTATTTGTCATCTGTTTGCTAGAAAGTTTGACGCAAGT GCTTTGGATCCTTTGCTTAACCTCACTTCCAGGGTAATGGAGTTCTGA
AA sequence Show only first row Show all	>Lus10040972 pacid=23180026 polypeptide=Lus10040972 locus=Lus10040972.g ID=Lus10040972.BGIv1.0 annot-version=v1.0 MARLREDGSSEIAHLGLLKLLKVLSFLLIFAAGIILGLLASSHVNTLFNSQRDLFYDVTTTTTTTSILSDANSSINCNISSSSSPNDSVVKPCNCKSCDD GDVDCLSMDTFLHPKHLAHGMNDEEIFWRASLVPTKRDYPFDRLPKVAFMFLTRGPMPLLLLWERFFKGHHDFFTIYVHTDPGYVLNVPTDSPFYGRQIP SQQVEWGTVSLLDAERRLLANALLEFSNERFLLFSESCIPIYNFPTVYNYLIHSQQSFVESYDDPSRYGRGRYSRKMLPNIWVKQWRKGSQWFEMQRALA SYIVSDTKYYTLFKKHCTPACYPDEHFLPTFIHMFHGSLSANRTLTWVDWSLGGPHPATYGAVNITESFIQSIRMNKTLCSYNTGTTPICHLFARKFDAS ALDPLLNLTSRVMEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10280			Core-2/I-branching beta-1,6-N-...		Lus10040972 [exp]	0	1
AT3G18710		ATPUB29	ARABIDOPSIS THALIANA PLANT U-B...		Lus10042798 [exp]	6.5	0.8757
AT2G33480	NAC	ANAC041	NAC domain containing protein ...		Lus10041534 [exp]	13.3	0.8539
AT3G54100			O-fucosyltransferase family pr...		Lus10021119 [exp]	15.2	0.8695
					Lus10006091 [exp]	18.1	0.8652
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10023857 [exp]	19.4	0.8692
AT1G73210			Protein of unknown function (D...		Lus10036189 [exp]	21.1	0.7797
AT5G38700			unknown protein		Lus10002433 [exp]	24.6	0.8652
AT5G39670			Calcium-binding EF-hand family...		Lus10042369 [exp]	24.7	0.8397
AT1G66240		ATX1, ATATX1	homolog of anti-oxidant 1 (.1....		Lus10034138 [exp]	27.1	0.8433
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10013039 [exp]	28.6	0.8553

Compare expression of checked genes

Lus10040972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.