Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25570 370 / 2e-127 Adenosylmethionine decarboxylase family protein (.1.2) AT3G02470 364 / 2e-124 SAMDC S-adenosylmethionine decarboxylase (.1.3.4) AT5G15950 352 / 1e-119 Adenosylmethionine decarboxylase family protein (.1.2) AT5G18930 268 / 2e-87 BUD2, SAMDC4 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000156 [exp] 387 / 1e-132 AT3G25570 486 / 3e-172 Adenosylmethionine decarboxylase family protein (.1.2) Lus10035083 [exp] 384 / 2e-132 AT3G25570 473 / 2e-168 Adenosylmethionine decarboxylase family protein (.1.2) Lus10031919 [exp] 382 / 7e-132 AT3G25570 470 / 4e-167 Adenosylmethionine decarboxylase family protein (.1.2) Lus10034412 [exp] 383 / 6e-131 AT3G25570 481 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Lus10019146 [exp] 381 / 3e-130 AT3G25570 478 / 3e-169 Adenosylmethionine decarboxylase family protein (.1.2) Lus10021951 [exp] 273 / 3e-89 AT5G18930 361 / 3e-124 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Lus10041241 [exp] 268 / 5e-87 AT5G18930 363 / 2e-125 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G101500 [exp] 453 / 4e-159 AT3G02470 358 / 2e-122 S-adenosylmethionine decarboxylase (.1.3.4) Potri.010G133900 [exp] 376 / 2e-129 AT3G25570 478 / 3e-170 Adenosylmethionine decarboxylase family protein (.1.2) Potri.004G106800 [exp] 375 / 6e-129 AT3G02470 478 / 3e-170 S-adenosylmethionine decarboxylase (.1.3.4) Potri.017G108800 [exp] 369 / 2e-126 AT3G02470 481 / 3e-171 S-adenosylmethionine decarboxylase (.1.3.4) Potri.008G198800 [exp] 267 / 4e-87 AT5G18930 461 / 1e-163 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1) Potri.010G028500 [exp] 264 / 1e-85 AT5G18930 451 / 7e-160 BUSHY AND DWARF 2, Adenosylmethionine decarboxylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01536 [flax] [poplar] SAM_decarbox Adenosylmethionine decarboxylase
Representative CDS sequence Show only first row Show all	>Lus10040973 pacid=23180016 polypeptide=Lus10040973 locus=Lus10040973.g ID=Lus10040973.BGIv1.0 annot-version=v1.0 ATGGATTCACCAATCGGATTCGAAGGATTCGAGAAGCGTCTCGAAATCTGTTTCTCCGAGGCGCCTATTTTCGTCGATCCAAATGGACTCGGCCTGCGCG CTCTAACTCGGTCTCAGATTGACTCAATCCTCGACTCAGCCAAGTGCACAATCGTGTCACAGCTCTCCAATGACGAGTTCGACTCGTACGTTCTCTCCGA GTCGAGCCTCTTCATTTACCCGCTGAGAATCATCATCAAGACATGCGGCACCACCAAGCTCCTCCTAGCCATCGAGCCGATTCTCAAACTCGCCGACTCG CTCTCTCTCGCCGTCAGCGATGTTCTCTACACGCGCGGCAGCTTCATATTCCCGAGTCGCCAGCTGGCACCTCACCGTAGCTTCTCCGAGGAAGTCTCCG CTCTGAACCAGTTCTTCGGAGATCTGAGGCACAAGGCCTACGTGTTGGGCGATTCGAACCGCAACTGGCACGTTTACTCCGCGTCAGCGAAGAAGGAAGC AGATGGGACGGACGTGATCACTCTCGAGATGTGCATGACTGGGTTGGATAAGAAGAAAGCCGAAGTATTTTTCAAGGCGGAGGACCGCACGGCCAAGGAA ATGACGAAACTTTCCGGGATATCAGAGATCCTCGCCGACCACGAGATCTGTGACTTTGACTTTGAGCCTTGCGGGTACTCGATGAACGGGATCGAAGGTG CAGCACTGTCCACCGTGCACGTGACCCCAGAGGACGGGTTCAGCTACGCCAGCTACGAGGCGATGGGATTCGATGCAGGGGGGACCACCTTAGATGCGCT GGTGGGTAGGGTGCTGAAATGCTTCGAGCCACGTGACTTTTCAGTGGCTGTCACTTGCCGCAGTGCCAGGTCACAGCTGTGGGCCATGGGGCTGGTCGAC GTCGAAGGATACTCCCGTGGGGACGTCGCCGTGGAAGAGCTTGCCGGCGGTGGCATAGTCGTTTACAAGACTTACAGCGCTGTTGATGAGCATAAGGTTG CTAGTAGAATTTCCTCTGTGGAGAGTGTCCTTGCGGTGGCTGAACAGGTGAAGGCGGCTAAGAAGGTGGAGGTTGACGGTTGTGGTAGGTTTGGCGGCAG CGTGGACGAGAAGGAAAAATGGGGTGATAATTCTGTGTTTGGGCCGGTGGAAAGTGGCGGCGGCGACATGGTAGTTATGTGGTGA
AA sequence Show only first row Show all	>Lus10040973 pacid=23180016 polypeptide=Lus10040973 locus=Lus10040973.g ID=Lus10040973.BGIv1.0 annot-version=v1.0 MDSPIGFEGFEKRLEICFSEAPIFVDPNGLGLRALTRSQIDSILDSAKCTIVSQLSNDEFDSYVLSESSLFIYPLRIIIKTCGTTKLLLAIEPILKLADS LSLAVSDVLYTRGSFIFPSRQLAPHRSFSEEVSALNQFFGDLRHKAYVLGDSNRNWHVYSASAKKEADGTDVITLEMCMTGLDKKKAEVFFKAEDRTAKE MTKLSGISEILADHEICDFDFEPCGYSMNGIEGAALSTVHVTPEDGFSYASYEAMGFDAGGTTLDALVGRVLKCFEPRDFSVAVTCRSARSQLWAMGLVD VEGYSRGDVAVEELAGGGIVVYKTYSAVDEHKVASRISSVESVLAVAEQVKAAKKVEVDGCGRFGGSVDEKEKWGDNSVFGPVESGGGDMVVMW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G25570			Adenosylmethionine decarboxyla...		Lus10040973 [exp]	0	1
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	1.4	0.8869
					Lus10025138 [exp]	3.7	0.8037
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Lus10005784 [exp]	5.7	0.8221
AT3G03770			Leucine-rich repeat protein ki...		Lus10034873 [exp]	12.8	0.8116
AT1G10850			Leucine-rich repeat protein ki...		Lus10029075 [exp]	13.1	0.8380
AT2G40230			HXXXD-type acyl-transferase fa...		Lus10028983 [exp]	13.8	0.7902
AT3G16290		EMB2083	embryo defective 2083, AAA-typ...		Lus10037574 [exp]	24.7	0.8063
AT4G02100			Heat shock protein DnaJ with t...		Lus10010272 [exp]	24.7	0.7827
AT3G28040			Leucine-rich receptor-like pro...		Lus10037276 [exp]	44.1	0.8022
AT5G41140			Myosin heavy chain-related pro...		Lus10024517 [exp]	45.5	0.7453

Compare expression of checked genes

Lus10040973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.