Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G31220 327 / 2e-112 Formyl transferase (.1) AT5G47435 67 / 2e-12 formyltetrahydrofolate deformylase, putative (.1.2) AT4G17360 67 / 2e-12 Formyl transferase (.1) AT1G66520 47 / 6e-06 PDE194 pigment defective 194, formyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013428 [exp] 583 / 0 AT1G31220 326 / 4e-112 Formyl transferase (.1) Lus10028958 [exp] 68 / 9e-13 AT5G47435 498 / 3e-179 formyltetrahydrofolate deformylase, putative (.1.2) Lus10010978 [exp] 49 / 2e-06 AT1G66520 496 / 2e-177 pigment defective 194, formyltransferase, putative (.1) Lus10000450 [exp] 47 / 8e-06 AT1G66520 510 / 0.0 pigment defective 194, formyltransferase, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G107500 [exp] 373 / 1e-130 AT1G31220 337 / 1e-116 Formyl transferase (.1) Potri.001G156600 [exp] 71 / 1e-13 AT5G47435 476 / 2e-170 formyltetrahydrofolate deformylase, putative (.1.2) Potri.003G078000 [exp] 67 / 2e-12 AT5G47435 484 / 7e-174 formyltetrahydrofolate deformylase, putative (.1.2) Potri.017G123300 [exp] 52 / 3e-07 AT1G66520 516 / 0.0 pigment defective 194, formyltransferase, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00551 [flax] [poplar] Formyl_trans_N Formyl transferase
Representative CDS sequence Show only first row Show all	>Lus10040974 pacid=23179900 polypeptide=Lus10040974 locus=Lus10040974.g ID=Lus10040974.BGIv1.0 annot-version=v1.0 ATGGATTCCCGCTGCTTCCTCTCTGATTTCTGCTCCAATTCAGCTTACCCGTCACTCAAGACCCTCCAAAACACCTTCTTTCGCTCTACTCCAATCCAAA GCTGTTGCCTTTCCTTCTCCACCCGATTTTCAGCTTCTTCGCAGATTGTTGTCAGTAACCGGTCTTTCAAAAGATTAGAGTTTGTTAATAGCTTTAGGGC GAGTGATGAATTAATCAAGGATGCTGCAGCTTCTTCTGAGGAGAAGAAACCTTTGGTTGCTAGGAAGAGGTTAGCTGTTTTCGTATCTGGCGGAGGCTCC AATTTCAAATCCCTTCATCAAGCTTGTCTTGACGGATTGGTTCATGGCGACGTTGTTGCTTTGGTCACCAATAAAACTGATTGTGGAGGTGCTGAGTATG CAAGAAACAAAGAGATCCCAGTTCTTCAATTCCCTAACACCAAAGGTGGAGCAGATGCATTGTCCCCAACTGAACTTGTGGATGCTCTCAGGATTTTGGA AGTTGACTTTGTTATCCTAGCTGGGTTTCTAAAACTTATACCAGTTGAGTTGATCCGGGCTTATCCTCGAGCCATACTAAATATCCATCCATCACTTCTT CCTGCTTTCGGGGGGAAAGGGTATTTCGGAATGAAGGTGCATAATGCGGTCATTTGCTCTGGTGCAAGGTACTCGGGAGCAACCATTCACTTTGTGGATG AGCATTATGACACGGGGCGCATCCTTGCTCAATGGGTGGTGCCTGTACTTGCAACTGATACTCCAGAGGACCTAGCAGCCAGAGTTCTCCATGAGGAGCA CAGGCTATATAAAGAAGTGGTAGCGGCATTGTGTGAAGGAAGGATAGTGTGGAGAGAAGATGGTGTTCCTCTGGTTCAAAGTAGAGAAGATCCCAGCCAA TTGTGCTAA
AA sequence Show only first row Show all	>Lus10040974 pacid=23179900 polypeptide=Lus10040974 locus=Lus10040974.g ID=Lus10040974.BGIv1.0 annot-version=v1.0 MDSRCFLSDFCSNSAYPSLKTLQNTFFRSTPIQSCCLSFSTRFSASSQIVVSNRSFKRLEFVNSFRASDELIKDAAASSEEKKPLVARKRLAVFVSGGGS NFKSLHQACLDGLVHGDVVALVTNKTDCGGAEYARNKEIPVLQFPNTKGGADALSPTELVDALRILEVDFVILAGFLKLIPVELIRAYPRAILNIHPSLL PAFGGKGYFGMKVHNAVICSGARYSGATIHFVDEHYDTGRILAQWVVPVLATDTPEDLAARVLHEEHRLYKEVVAALCEGRIVWREDGVPLVQSREDPSQ LC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G31220			Formyl transferase (.1)		Lus10040974 [exp]	0	1
AT1G31220			Formyl transferase (.1)		Lus10013428 [exp]	11.7	0.8046
AT3G57670	C2H2ZnF	WIP2, NTT	WIP domain protein 2, NO TRANS...		Lus10039613 [exp]	15.2	0.7708
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Lus10020742 [exp]	45.8	0.6928
AT2G44430			DNA-binding bromodomain-contai...		Lus10010335 [exp]	61.5	0.7123
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10016835 [exp]	76.5	0.7098
AT4G23440			Disease resistance protein (TI...		Lus10024639 [exp]	80.1	0.7357
AT5G03500			Mediator complex, subunit Med7...		Lus10029326 [exp]	89.8	0.7111
AT3G13940			DNA binding;DNA-directed RNA p...		Lus10029818 [exp]	96.0	0.7404
AT3G08980			Peptidase S24/S26A/S26B/S26C f...		Lus10002492 [exp]	112.9	0.7057
AT1G09815		POLD4	polymerase delta 4 (.1)		Lus10020362 [exp]	135.8	0.7134

Compare expression of checked genes

Lus10040974 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.