Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19760 494 / 1e-176 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 399 / 2e-139 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 372 / 3e-128 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 367 / 3e-126 EIF4A-2 eif4a-2 (.1.2) AT1G72730 363 / 1e-124 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 185 / 1e-54 ATRH8 RNAhelicase-like 8 (.1.2) AT1G55150 179 / 2e-52 DEA(D/H)-box RNA helicase family protein (.1) AT5G63120 178 / 3e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G61240 175 / 8e-51 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT5G11170 169 / 6e-50 DEAD/DEAH box RNA helicase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017407 [exp] 523 / 0 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 513 / 0 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10017153 [exp] 337 / 2e-114 AT3G13920 785 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10006878 [exp] 333 / 8e-113 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10037620 [exp] 333 / 9e-113 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10021583 [exp] 204 / 4e-64 AT3G13920 540 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Lus10014783 [exp] 184 / 3e-54 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017804 [exp] 183 / 1e-53 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 180 / 1e-52 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G093900 [exp] 489 / 1e-174 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.007G070000 [exp] 488 / 4e-174 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.006G225700 [exp] 370 / 1e-127 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.018G061050 [exp] 370 / 2e-127 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.001G197900 [exp] 366 / 8e-126 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 363 / 5e-125 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.002G157500 [exp] 186 / 6e-55 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 186 / 7e-55 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.006G119000 [exp] 177 / 9e-52 AT3G53110 646 / 0.0 LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G038300 [exp] 171 / 3e-49 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00270 [flax] [poplar] DEAD DEAD/DEAH box helicase
Representative CDS sequence Show only first row Show all	>Lus10040975 pacid=23179713 polypeptide=Lus10040975 locus=Lus10040975.g ID=Lus10040975.BGIv1.0 annot-version=v1.0 ATGGCTGACCCTTTGCAGGAAGAGAAAGATCGTGTTGACGGTGCAGCAATAAGACCGCTCACCTTGGATGATTTTATCCAGTCAAAGGCTAAGCGCCGAT TGAACATTCAAGCACATGCATGCATTGGTGGAAAAAGTGTGGGTGGAGACATTAGAAAGCTCGACTATGGAGTTCATGTTGTATCAGGAACGCCAGGTAG CGTATGTGACATGATCAAGAGGAAGACTTTGCGCACTACAGCCATTAAACTATTAATCCTAGATGAATCTGAGGAGATGTTGATCAGAGGTTTCAAGGAG CAAATATATGATATTTACAGACATCGTCGACCAGATCTTCAGGTTGTCTTGATCTCAGCTACACTGCCCAATGAAATTTTGGAGATCACTAGTAAGTTCA TGACAGATCCAGTGAAGATTCTTGTAAAACGTGATGAACTGACTTTGGAGGGCATCAAACAGTTTTTTGTTGCTGTCGAAAAGGAAGAGTGGAAGTCCGA CGCCCTTTGTGATCTTTATGATACACTTACCGTCAGTCAAGCTGTTATATTTTGCAATACAAAGAGGACGGTTGATTGGTTGACTGAGAAGATGCGCAGC ACCAACTTCACAGTCTCATCGATGCATGGTGATATGCCTCAGAAAGAAAGAGATGCAATTACGAAGGAATTCAGGGAGGGTACTACCCGTGTTCTGATCA CTACAGATGTTTGTGCCCGTGGACTAGACGTTCAGCAGGCAAGTAGCATTGTTTCTCTGGTGATCAATTATGACCTCCCAAACAATCGTGAGCTGTACAT TCACAGAATCGGGCGTTCTGGACGTTTTGGACGCAAGGGTGTGGCCATCAATTTCGTGAAATCAGATAATATAAGGATACTGAGAAATATAGAGCAATAC TACAGCGCTCAGATTGACGAAATGCCAATGAATGTTGCTGACCAGATCTAA
AA sequence Show only first row Show all	>Lus10040975 pacid=23179713 polypeptide=Lus10040975 locus=Lus10040975.g ID=Lus10040975.BGIv1.0 annot-version=v1.0 MADPLQEEKDRVDGAAIRPLTLDDFIQSKAKRRLNIQAHACIGGKSVGGDIRKLDYGVHVVSGTPGSVCDMIKRKTLRTTAIKLLILDESEEMLIRGFKE QIYDIYRHRRPDLQVVLISATLPNEILEITSKFMTDPVKILVKRDELTLEGIKQFFVAVEKEEWKSDALCDLYDTLTVSQAVIFCNTKRTVDWLTEKMRS TNFTVSSMHGDMPQKERDAITKEFREGTTRVLITTDVCARGLDVQQASSIVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDNIRILRNIEQY YSAQIDEMPMNVADQI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10040975 [exp]	0	1
AT3G22142			Bifunctional inhibitor/lipid-t...		Lus10010482 [exp]	1.7	0.9850
AT1G31710			Copper amine oxidase family pr...		Lus10010540 [exp]	2.0	0.9846
AT4G12310		CYP706A5	"cytochrome P450, family 706, ...		Lus10032210 [exp]	3.2	0.9788
					Lus10010481 [exp]	3.5	0.9796
AT1G79690		ATNUDT3	nudix hydrolase homolog 3 (.1)		Lus10024090 [exp]	3.5	0.9736
					Lus10014719 [exp]	3.9	0.9797
AT1G15260			unknown protein		Lus10037547 [exp]	4.6	0.9671
					Lus10041394 [exp]	6.2	0.9555
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Lus10000638 [exp]	7.3	0.9180
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10036818 [exp]	7.7	0.9504

Compare expression of checked genes

Lus10040975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.