Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50120 593 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013430 [exp] 967 / 0 AT1G50120 625 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G071000 [exp] 708 / 0 AT1G50120 652 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08737 [flax] [poplar] Rgp1 Rgp1
Representative CDS sequence Show only first row Show all	>Lus10040977 pacid=23179560 polypeptide=Lus10040977 locus=Lus10040977.g ID=Lus10040977.BGIv1.0 annot-version=v1.0 ATGCTGCCTGGTAGATTCTCTTTGTTTGGCGGTGGCAGAGGTTCGGACAAGGAGAGAAGTTCTGTTGATGACCTGAAAAGTGATCTTGTGCCGACCTTCA AACTGCAAACTGATAGAGATGTATATAGGCCTGGTGATTCCGTTTTTGTTACTATTGAGATAAATAATCCCAATCATGGGGCTGCTCTAGACGTCCCCGC AGCTCCCCTGTTAATTGAAAGGCTTGGCTTCGAAATTAAAGGTATGGAGAAGTTGGATAACCAGTGGTTCACTACTCCGAAGGAAGCCTCTGGATCCAGA CAGAGAAGAGGTGAACATGTTTTTATGGATTGCTCAACGTCAACTCTTGTTTCTAATCATGTCGTATCATCTGGTGCCACCAAAACATATGTAGTGCGCA TAGTTCTGCCCACCATCATACCTCCCTCATACAGGGGTGCTACCATCCGGTATATGTACTACGTTAAAAGTGTTCTATCTGGACAACGGCTGATACTGGA CAACGACCACTCTCATAAGGAATCAAGAAAGGATCTTATTTTGCTAGAAGCTCGCAATCCGTTGCAAGTATGGGTAACCGAAAAAAACAATGGACTGATA TCGGAAGAAAGCCCAAATGATGGGATTGTGCCTGCCATTACTATCCAGTTGGATGTGCACTGGAGAGAAATGGATGGTGATTCTGAATGGGCTAGAGCAA ACGAAGTAGAAGATGCACTTGAGGATGGCTATGAAAGCTCAAAGGATGAAGTGTCATCTATTTCTTCCTACAATCATGCCCGAGAAAGTATACACAAACC ATTTGGAAGCACCTTATCGCTGCGGTCTGCTTCAGCACGGTCTCTTACTCCGCAACTTCCTCGACTTTCTGTGGCTGAAGTTCTGTATGACCCTGCCGAA GATAACTCATCTCGGGACAAGACTTCTGAAAACCTCTCTCCGACATTGCTGCAGAGTACAACAAAGCCCCATTTTGAAGATGAGGATGCAGGAATATCTT CTACAAGTGCAGCAACTACGCATGACCCTGCTCCATCAGAAGGCTTTGGCCGAGGAAGGTCATATAACATCAGGATGGATGACCGTGTGCTTCTCAGATT TTCCCCGAGGAACTCTGACTCTACCTACTACTTCAGTGATATGATTGGTGGAACACTAACCTTTTTCCATGAAGAAGGAGCTAGGAGGTGCCTGGAGGTC TCAATAACGTTGGAAACGTCGGAGACTATAAATCGGCGATTTGTGCATCCTTCTCGCAAGAGTTCCCCAACAATAACTAAGGTCCAAAGTGATCATCATG AGGTTGTTGCAGATTTGCAGCAGACTAGCTTTCTTTTCTCAATCCCCATGGATGGACCCATGTCATTTTCCACTCCCCGTGTCTCTGTACAATGGGCTTT ACGATTTGAATTTTTCACCACTCCGAAGAATGTTGACTGGTCAAGGTATGAGCATCCACTTCTGATAGAAGCAAGAGACAAAAGTGAGTGGGTTCTCCCA ATTACAGTGCACGCAACTCCACCGGTGGCTCAAGCAGCCCACGGTCGGAACGAGAATATGTTTTCATTGGAACCGCTGTGGGTCCGTACTTGA
AA sequence Show only first row Show all	>Lus10040977 pacid=23179560 polypeptide=Lus10040977 locus=Lus10040977.g ID=Lus10040977.BGIv1.0 annot-version=v1.0 MLPGRFSLFGGGRGSDKERSSVDDLKSDLVPTFKLQTDRDVYRPGDSVFVTIEINNPNHGAALDVPAAPLLIERLGFEIKGMEKLDNQWFTTPKEASGSR QRRGEHVFMDCSTSTLVSNHVVSSGATKTYVVRIVLPTIIPPSYRGATIRYMYYVKSVLSGQRLILDNDHSHKESRKDLILLEARNPLQVWVTEKNNGLI SEESPNDGIVPAITIQLDVHWREMDGDSEWARANEVEDALEDGYESSKDEVSSISSYNHARESIHKPFGSTLSLRSASARSLTPQLPRLSVAEVLYDPAE DNSSRDKTSENLSPTLLQSTTKPHFEDEDAGISSTSAATTHDPAPSEGFGRGRSYNIRMDDRVLLRFSPRNSDSTYYFSDMIGGTLTFFHEEGARRCLEV SITLETSETINRRFVHPSRKSSPTITKVQSDHHEVVADLQQTSFLFSIPMDGPMSFSTPRVSVQWALRFEFFTTPKNVDWSRYEHPLLIEARDKSEWVLP ITVHATPPVAQAAHGRNENMFSLEPLWVRT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G50120			unknown protein		Lus10040977 [exp]	0	1
AT1G52360			Coatomer, beta' subunit (.1.2)		Lus10011467 [exp]	1.0	0.9505
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Lus10023103 [exp]	1.4	0.9324
AT1G67930			Golgi transport complex protei...		Lus10007329 [exp]	2.8	0.9235
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Lus10023394 [exp]	4.9	0.9279
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	4.9	0.9202
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	6.3	0.9229
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031155 [exp]	7.7	0.8986
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10004499 [exp]	8.9	0.9099
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10015176 [exp]	9.5	0.9074
AT3G05420		ACBP4	acyl-CoA binding protein 4 (.1...		Lus10031497 [exp]	10.4	0.9160

Compare expression of checked genes

Lus10040977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.